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Report for Sequence Feature Glyma.12g084100

Feature Type:gene_model
Chromosome:Gm12
Start:6719530
stop:6722364
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g084100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08200.1AT UDP-D-apiose/UDP-D-xylose synthase 2 JGI N/AIEA
GO:0006694GO-bp steroid biosynthetic process JGI N/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0044237GO-bp cellular metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0003854GO-mf 3-beta-hydroxy-delta5-steroid dehydrogenase activity JGI N/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0050662GO-mf coenzyme binding EnsemblGenomesN/AIEA
GO:0050662GO-mf coenzyme binding JGI N/AIEA
KOG1429 KOG dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase JGI N/AIEA
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI N/AIEA
PTHR10366:SF147Panther JGI N/AIEA
PF01370PFAM NAD dependent epimerase/dehydratase family JGI N/AIEA
PWY-4821SoyCyc9 UDP-α-D-xylose biosynthesis Plant Metabolic Network ISS
PWY-5113SoyCyc9 UDP-D-apiose biosynthesis (from UDP-D-glucuronate) Plant Metabolic Network ISS
GN7V-49980SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.12g084100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.12g084100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g08930 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g084100
>Glyma.12g084100.1 sequence-type=CDS polypeptide=Glyma.12g084100.1.p locus=Glyma.12g084100 ID=Glyma.12g084100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGCGAGTGGATCTGGACGGGAACCCCATGAAGGCACTTACGATCTGCATGATCGGCGCTGGCGGCTTCATAGGCTCGCATCTCTGCGAGAAGCTCATGTCCGAAACCCCTCACACCGTCCTCGCCCTCGACGTCTACAACGACAAGATCAAACACCTCCTCGAACCCTCCGATTCCCCCTGGGCCGGCCGCATCACCTTCCACCGCCTCAACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGCGAAGTGTACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTTCTATTGAAAAACAGAGGTGGTCTTATGCCTGTGCGAAACAGTTGATTGAGAGGCTGATTTATGCTGAGGGTGCTGAAAATGGCTTGGAGTTCACAATTGTGAGGCCTTTTAACTGGATTGGACCTCGAATGGATTTCATTCCTGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAGAGAACCTTTGTTTACATTAAAGATGCTATTGAAGCTGTCTTGCTGATGATTGAAAACCCTGCCAGGGCCAATGGCCACATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGATGTGAGCTCAAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAGAGAATCCCTGACATGA
Predicted protein sequences of Glyma.12g084100
>Glyma.12g084100.1.p sequence-type=predicted peptide transcript=Glyma.12g084100.1 locus=Glyma.12g084100 ID=Glyma.12g084100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARVDLDGNPMKALTICMIGAGGFIGSHLCEKLMSETPHTVLALDVYNDKIKHLLEPSDSPWAGRITFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGAFLPKDSPLRKDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEIMIKVYSKVSGEQTPETPTVDVSSKEFYGEGYDDSDRESLT*






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