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Report for Sequence Feature Glyma.12g083100

Feature Type:gene_model
Chromosome:Gm12
Start:6586692
stop:6592302
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G27920.1AT serine carboxypeptidase-like 51 JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0051603GO-bp proteolysis involved in cellular protein catabolic process EnsemblGenomesN/AIEA
GO:0004180GO-mf carboxypeptidase activity EnsemblGenomesN/AIEA
GO:0004185GO-mf serine-type carboxypeptidase activity EnsemblGenomesN/AIEA
GO:0004185GO-mf serine-type carboxypeptidase activity JGI N/AIEA
GO:0008233GO-mf peptidase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
KOG1283 KOG Serine carboxypeptidases JGI N/AIEA
PTHR11802Panther SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE JGI N/AIEA
PTHR11802:SF3Panther RETINOID-INDUCIBLE SERINE CARBOXYPEPTIDASE JGI N/AIEA
PF00450PFAM Serine carboxypeptidase JGI N/AIEA

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.11g191200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma12g08820 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.12g083100.2 sequence-type=transcript locus=Glyma.12g083100 ID=Glyma.12g083100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTATATTCATTTTCTTTTTTTCAAGTGAATCTCTTAATATCCTCTTGATGGCCCCCACACGACTTGCAGTCAGACTCTCACGATCTTGTCTCAGAAGAACAGAACGCTGACATGACAAAACAAGCTTCTTCCTAAGCAATCCTCTTTGCTGCTTTGACTCACCAATATAAATATCAATTGCCGTATCCTTTGcttcacttcactccttctcttctcatattgcttcctttctttctcttctTCAAATGGAGAAAAAGGTCCCCTTTTTTTTCTCCATTCTCTTATTCATTGCTCTGCTATTTCATGGAGGAAAGGTGTTAGCTTTGAATTGCCAAGACGGATCAGAGGAATGGGGATACGTTCAAGTCAGACCCAAAGCGCACATGTTTTGGTGGCTTTATAAAAGTCCATATAGAGTGGAAGATCCTTCTAAGCCGTGGCCAATTGTTCTCTGGTTGCAAGGAGGACCTGGTGCTTCAGGAGTAGGGATTGGAAATTTTGAGGAGATTGGGCCTTTGGACAGAAGCTTGAAGCCGCGGAATTCCACATGGTTGAGAAAAGCAGATCTCTTGTTTGTGGACAATCCAGTTGGAACCGGGTACAGTTTTGTGGAGGATAAGAAACTCTTTGTGAAAACAGATGATGAGGCAGCCACCGACTTGACTACATTGTTGATTGAATTATTCAGTGGGGATGAGAAACTGCAAAAGAGTCCTCTGTTCATTGTGGCAGAGTCATATGGTGGCAAATTTGCTGTCACTGCTGGGTTATCTGCTCTGAAAGCTATAGAAGATGGGAAATTGAAGCTTAGACTTGGAGGTGTGGCATTAGGAGACAGTTGGATCTCCCCTGAAGATTTTGTGTTCTCATGGGGTCCTCTCCTTAAAGACCTCTCACGACTTGACGATAATGGACTGCAAAAATCAAACAGTATAGCTGAGAGGATCAAGCAGCAAATTGAGGACGGTAAATTTGTTGAAGCCACCGACTCATGGGGTGAACTTGAGAATGTGATTGCTACCAGCAGCAACAATGTGGACTTCTACAATTTATTGGAGGATGCGGGAGGTGATGACATAGCAGCAATGGAGTTAGGGTCATATGAGAAATTATCAATGGAGAAGTACTCCAGATATCTTACTTCCATGAGGTCAAGGTCATCATCTCCTGGTGGTGATGATGATCTTGACAAGTTACTAAACGGTGTCATAAAGAAAAAGTTAAAGATCATCCCTGAGAATGTCACATGGGGAGGGCAGTCTGGTGATGTTTTCAACTATCTTGCAGGTGATTTTATGAGACCAAGAATTAATGAGGTTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAAGTCGATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAAAGTGGGAAGGGCTTAAAATTTTCTTGGCGAAAGATAGAACACCTCTCTACTGCGGAAGTGACAAATCTACAACCAAAGGCTTTGTTAAGTCATATAAAAACCTATACTTCTATTGGATCCTCAAAGCTGGCCATTTTGTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACACAGTCACCAGCTACTTGACATTTGCATAGAAAAGGAAATAATGTTACTACTACTCTTTGGAAGGTGAAGCAGCGTACAAGAAAAGAGTCAACAAACAAAATAGAACATGATCGTCAAGCAGTGAAAAGCAATAAAAAGACTCGTTACAGTGATCCTACTGATTGTTTGCTTTACCATCTCATTCTTTTCCGAATGTCATAATTAATTATATACTTTTTTTATCCTTGAAATTTAGTCTCTTCACTATATTCTGACTTTTAAAATGGAAAATAATTATTTCTTATTC

>Glyma.12g083100.1 sequence-type=CDS polypeptide=Glyma.12g083100.1.p locus=Glyma.12g083100 ID=Glyma.12g083100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAAAAGGTCCCCTTTTTTTTCTCCATTCTCTTATTCATTGCTCTGCTATTTCATGGAGGAAAGGTGTTAGCTTTGAATTGCCAAGACGGATCAGAGGAATGGGGATACGTTCAAGTCAGACCCAAAGCGCACATGTTTTGGTGGCTTTATAAAAGTCCATATAGAGTGGAAGATCCTTCTAAGCCGTGGCCAATTGTTCTCTGGTTGCAAGGAGGACCTGGTGCTTCAGGAGTAGGGATTGGAAATTTTGAGGAGATTGGGCCTTTGGACAGAAGCTTGAAGCCGCGGAATTCCACATGGTTGAGAAAAGCAGATCTCTTGTTTGTGGACAATCCAGTTGGAACCGGGTACAGTTTTGTGGAGGATAAGAAACTCTTTGTGAAAACAGATGATGAGGCAGCCACCGACTTGACTACATTGTTGATTGAATTATTCAGTGGGGATGAGAAACTGCAAAAGAGTCCTCTGTTCATTGTGGCAGAGTCATATGGTGGCAAATTTGCTGTCACTGCTGGGTTATCTGCTCTGAAAGCTATAGAAGATGGGAAATTGAAGCTTAGACTTGGAGGTGTGGCATTAGGAGACAGTTGGATCTCCCCTGAAGATTTTGTGTTCTCATGGGGTCCTCTCCTTAAAGACCTCTCACGACTTGACGATAATGGACTGCAAAAATCAAACAGTATAGCTGAGAGGATCAAGCAGCAAATTGAGGACGGTAAATTTGTTGAAGCCACCGACTCATGGGGTGAACTTGAGAATGTGATTGCTACCAGCAGCAACAATGTGGACTTCTACAATTTATTGGAGGATGCGGGAGGTGATGACATAGCAGCAATGGAGTTAGGGTCATATGAGAAATTATCAATGGAGAAGTACTCCAGATATCTTACTTCCATGAGGTCAAGGTCATCATCTCCTGGTGGTGATGATGATCTTGACAAGTTACTAAACGGTGTCATAAAGAAAAAGTTAAAGATCATCCCTGAGAATGTCACATGGGGAGGGCAGTCTGGTGATGTTTTCAACTATCTTGCAGGTGATTTTATGAGACCAAGAATTAATGAGGTTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAAGTCGATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAAAGTGGGAAGGGCTTAAAATTTTCTTGGCGAAAGATAGAACACCTCTCTACTGCGGAAGTGACAAATCTACAACCAAAGGCTTTGTTAAGTCATATAAAAACCTATACTTCTATTGGATCCTCAAAGCTGGCCATTTTGTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACACAGTCACCAGCTACTTGA

>Glyma.12g083100.2 sequence-type=CDS polypeptide=Glyma.12g083100.2.p locus=Glyma.12g083100 ID=Glyma.12g083100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAAAAGGTCCCCTTTTTTTTCTCCATTCTCTTATTCATTGCTCTGCTATTTCATGGAGGAAAGGTGTTAGCTTTGAATTGCCAAGACGGATCAGAGGAATGGGGATACGTTCAAGTCAGACCCAAAGCGCACATGTTTTGGTGGCTTTATAAAAGTCCATATAGAGTGGAAGATCCTTCTAAGCCGTGGCCAATTGTTCTCTGGTTGCAAGGAGGACCTGGTGCTTCAGGAGTAGGGATTGGAAATTTTGAGGAGATTGGGCCTTTGGACAGAAGCTTGAAGCCGCGGAATTCCACATGGTTGAGAAAAGCAGATCTCTTGTTTGTGGACAATCCAGTTGGAACCGGGTACAGTTTTGTGGAGGATAAGAAACTCTTTGTGAAAACAGATGATGAGGCAGCCACCGACTTGACTACATTGTTGATTGAATTATTCAGTGGGGATGAGAAACTGCAAAAGAGTCCTCTGTTCATTGTGGCAGAGTCATATGGTGGCAAATTTGCTGTCACTGCTGGGTTATCTGCTCTGAAAGCTATAGAAGATGGGAAATTGAAGCTTAGACTTGGAGGTGTGGCATTAGGAGACAGTTGGATCTCCCCTGAAGATTTTGTGTTCTCATGGGGTCCTCTCCTTAAAGACCTCTCACGACTTGACGATAATGGACTGCAAAAATCAAACAGTATAGCTGAGAGGATCAAGCAGCAAATTGAGGACGGTAAATTTGTTGAAGCCACCGACTCATGGGGTGAACTTGAGAATGTGATTGCTACCAGCAGCAACAATGTGGACTTCTACAATTTATTGGAGGATGCGGGAGGTGATGACATAGCAGCAATGGAGTTAGGGTCATATGAGAAATTATCAATGGAGAAGTACTCCAGATATCTTACTTCCATGAGGTCAAGGTCATCATCTCCTGGTGGTGATGATGATCTTGACAAGTTACTAAACGGTGTCATAAAGAAAAAGTTAAAGATCATCCCTGAGAATGTCACATGGGGAGGGCAGTCTGGTGATGTTTTCAACTATCTTGCAGGTGATTTTATGAGACCAAGAATTAATGAGGTTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAAGTCGATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAAAGTGGGAAGGGCTTAAAATTTTCTTGGCGAAAGATAGAACACCTCTCTACTGCGGAAGTGACAAATCTACAACCAAAGGCTTTGTTAAGTCATATAAAAACCTATACTTCTATTGGATCCTCAAAGCTGGCCATTTTGTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACACAGTCACCAGCTACTTGA

>Glyma.12g083100.1.p sequence-type=predicted peptide transcript=Glyma.12g083100.1 locus=Glyma.12g083100 ID=Glyma.12g083100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKKVPFFFSILLFIALLFHGGKVLALNCQDGSEEWGYVQVRPKAHMFWWLYKSPYRVEDPSKPWPIVLWLQGGPGASGVGIGNFEEIGPLDRSLKPRNSTWLRKADLLFVDNPVGTGYSFVEDKKLFVKTDDEAATDLTTLLIELFSGDEKLQKSPLFIVAESYGGKFAVTAGLSALKAIEDGKLKLRLGGVALGDSWISPEDFVFSWGPLLKDLSRLDDNGLQKSNSIAERIKQQIEDGKFVEATDSWGELENVIATSSNNVDFYNLLEDAGGDDIAAMELGSYEKLSMEKYSRYLTSMRSRSSSPGGDDDLDKLLNGVIKKKLKIIPENVTWGGQSGDVFNYLAGDFMRPRINEVDELLTKGVNVTVYNGQVDLICSTKGTEAWVHKLKWEGLKIFLAKDRTPLYCGSDKSTTKGFVKSYKNLYFYWILKAGHFVPTDQPCVALDMVGAITQSPAT*

>Glyma.12g083100.2.p sequence-type=predicted peptide transcript=Glyma.12g083100.2 locus=Glyma.12g083100 ID=Glyma.12g083100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKKVPFFFSILLFIALLFHGGKVLALNCQDGSEEWGYVQVRPKAHMFWWLYKSPYRVEDPSKPWPIVLWLQGGPGASGVGIGNFEEIGPLDRSLKPRNSTWLRKADLLFVDNPVGTGYSFVEDKKLFVKTDDEAATDLTTLLIELFSGDEKLQKSPLFIVAESYGGKFAVTAGLSALKAIEDGKLKLRLGGVALGDSWISPEDFVFSWGPLLKDLSRLDDNGLQKSNSIAERIKQQIEDGKFVEATDSWGELENVIATSSNNVDFYNLLEDAGGDDIAAMELGSYEKLSMEKYSRYLTSMRSRSSSPGGDDDLDKLLNGVIKKKLKIIPENVTWGGQSGDVFNYLAGDFMRPRINEVDELLTKGVNVTVYNGQVDLICSTKGTEAWVHKLKWEGLKIFLAKDRTPLYCGSDKSTTKGFVKSYKNLYFYWILKAGHFVPTDQPCVALDMVGAITQSPAT*







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