Glyma.12g075700

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Report for Sequence Feature Glyma.12g075700

Feature Type:	gene_model
Chromosome:	Gm12
Start:	5794863
stop:	5798468
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12g075700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G28380.1	AT	dsRNA-binding protein 2	JGI	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
PTHR11207	Panther	RIBONUCLEASE III	JGI	N/A	IEA
PF00035	PFAM	Double-stranded RNA binding motif	JGI	N/A	IEA

Proteins Associated with Glyma.12g075700

Locus	Gene Symbol	Protein Name
	DRB2A	dsRNA-binding protein Drb2a

Expression Patterns of Glyma.12g075700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.12g075700

Paralog	Evidence	Comments
Glyma.11g145900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g075700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma12g08070	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.12g075700

Limit To All Plant Sequences

>Glyma.12g075700.1 sequence-type=CDS polypeptide=Glyma.12g075700.1.p locus=Glyma.12g075700 ID=Glyma.12g075700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATAAGAACCAGCTGCAGGAGCTGGCACAGCGGAGCTGCTTCAACCTGCCTTCGTACACGTGCATTCGGGAAGGTCCTGATCACGCGCCCCGCTTCAAGGCCACCGTTAACTTTAACGGCGAGATCTTCGAGAGCCCTCATTACTGTTCAACGCTCCGTCAGGCGGAGCACTCCGCCGCCGAGGTGGCGCTCAATTCCCTCTCTAACCGTGCTCCCTCTCACTCCCTCGCCGCCAGGATCCTCGATGAAACGGGGGTGTACAAGAACCTCTTGCAGGAAATTGCGCAGAGGGTAGGGGCGCCGTTGCCGCAGTATTTTACATTCAGGTCAGGGTTAGGACATTTACCTGTTTTTACGGGGACAGTGGAGTTAGCTGGAATCATGTTTACTGGTGAACCTGCCAAGAATAAGAAACAAGCGGAGAAAAATGCAGCTATGGCCGCATGGTCTTCTCTAAAGCAATTGGCAAAAGAAACTGCAAGGTCTTCAACTGAACCCGAGAACAATGACGAACTAGAACAGATCACTATAGCACGGGCCTTACTGAACTACAGACTGAAGGAAAAGATTTCAATGTCAAATTCAAATGCTCCAGTTCCATTTCCAAAGAAGTTTCAGATTCAAAATCCCAGGCCAACCAGTCCTCAGCCCCCACCTGCTGCTACATCAAAGATTCTTCCCTTAATTTGCCAAAAGGCAGCTCCTCGAAGCAGACATCTAGTAGGAGCATCTCCAGCACGAGCTTCCTGCGACAATTCTGCGATGCCACAGCTTTCTGCTACACCAGAAAGCCGAGGAATCCGTCGCCCTAAGTTCCCTGCAGCCGGAGCAGCACCTTATGTTCCCATTAGACAAATGAGGCCTTGTCAGGGGATGGCACCTCCGGTGACAATAAGGACTGCAATACCTGTATTCTCCCCACCGCCAGCAGCAGCTGCAGTGTCCCATCAAGTACTACGAGCTCCTCATGTACGAGTTGCACCTCCGGTCACTATTCGGCAAGCTGTTCCAGTATTTGCTACTCCACCTCCTCCGATTCGAAAAGATGAACCTGTTCCCATCCCAAAAGACGAACCACCAACCATTAGTGCCCCTAGCCCGGAAGACAAACTGCCAGCTAAAACGCCAGAGGCAGAGACCAAGACTGAGAACATTCCACCTAAACCTGACATGGTAAAGAGCTTGGAGCAGCTGAAAATTTGA

Predicted protein sequences of Glyma.12g075700

Limit To All Plant Sequences

>Glyma.12g075700.1.p sequence-type=predicted peptide transcript=Glyma.12g075700.1 locus=Glyma.12g075700 ID=Glyma.12g075700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFTGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIARALLNYRLKEKISMSNSNAPVPFPKKFQIQNPRPTSPQPPPAATSKILPLICQKAAPRSRHLVGASPARASCDNSAMPQLSATPESRGIRRPKFPAAGAAPYVPIRQMRPCQGMAPPVTIRTAIPVFSPPPAAAAVSHQVLRAPHVRVAPPVTIRQAVPVFATPPPPIRKDEPVPIPKDEPPTISAPSPEDKLPAKTPEAETKTENIPPKPDMVKSLEQLKI*

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