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Report for Sequence Feature Glyma.12g073000

Feature Type:gene_model
Chromosome:Gm12
Start:5388370
stop:5391780
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g073000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G45640.1AT mitogen-activated protein kinase 3 JGI N/AIEA
GO:0000165GO-bp MAPK cascade EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0009103GO-bp lipopolysaccharide biosynthetic process JGI N/AIEA
GO:0010468GO-bp regulation of gene expression EnsemblGenomesN/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0004707GO-mf MAP kinase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016773GO-mf phosphotransferase activity, alcohol group as acceptor JGI N/AIEA
KOG0660 KOG Mitogen-activated protein kinase JGI N/AIEA
PTHR24055Panther MITOGEN-ACTIVATED PROTEIN KINASE JGI N/AIEA
PTHR24055:SF69Panther JGI N/AIEA
PF00069PFAM Protein kinase domain JGI N/AIEA

Proteins Associated with Glyma.12g073000
LocusGene SymbolProtein Name
MAPK3-2 mitogen-activated protein kinase kinase gene 3 gene 2

Expression Patterns of Glyma.12g073000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.12g073000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g07770 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g073000
>Glyma.12g073000.1 sequence-type=CDS polypeptide=Glyma.12g073000.1.p locus=Glyma.12g073000 ID=Glyma.12g073000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGGAGTTAATCCAAACGGCGTCGCCGATTTTGCGGCGGTTCCGACGCATGGCGGACAGTTCATTCAGTACAACATATTTGGAAACCTCTTCGAGGTTACGACGAAGTACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTGCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGCGAACGCTTTCGACAATCACATGGACGCTAAGCGTACGCTTCGTGAGATTAAGCTTCTTAGGCATTTGGATCATGAAAATGTAATTGGTTTGAGAGATGTTATTCCTCCACCCTTGCGTAGAGAGTTTAATGATGTCTACATAGCCACTGAACTCATGGATACTGATCTTCACCATATCATTCGCTCCAATCAAAATCTGTCAGAGGAGCACTGCCAATACTTCTTGTACCAGATTCTTCGTGGGCTTAAGTATATACATTCTGCAAACGTAATCCATAGAGATTTAAAACCAAGCAACCTGCTGCTAAACTCAAACTGTGATTTAAAGATTATTGATTTTGGTCTTGCGAGACCGACTTTGGAAAGTGACTTCATGACAGAATATGTAGTCACAAGATGGTATAGAGCTCCCGAATTGTTGTTGAACTCCTCTGATTACACCTCTGCTATAGATGTGTGGTCTGTTGGTTGCATCTTTATGGAGCTTATGAATAAAAAGCCTCTGTTTCCGGGCAAAGACCATGTGCATCAGATGCGCCTATTGACAGAGCTTCTTGGCACCCCAACTGAGGCTGACCTTGGGTTAGTGAAAAATGAAGATGCAAGAAGATATATCAGACAACTTCCTCAATATCCTCGCCAACCTTTAGCTCAAGTCTTCCCCCATGTTCATCCCGCAGCCATTGATCTTGTTGATAAAATGCTGACAGTTGATCCCACCAAAAGAATTACAGTTGAAGAAGCACTAGCCCATCCATACCTTGAAAAACTGCATGATGTAGCTGATGAACCAATCTGCATGGAGCCATTCTCATTTGATTTTGAGCAACAGCAATTGGATGAAGAGCAAATAAAAGAGATGATCTACAGGGAAGCATTAGCACTGAATCCTGAGTATGCTTAA
Predicted protein sequences of Glyma.12g073000
>Glyma.12g073000.1.p sequence-type=predicted peptide transcript=Glyma.12g073000.1 locus=Glyma.12g073000 ID=Glyma.12g073000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGVNPNGVADFAAVPTHGGQFIQYNIFGNLFEVTTKYRPPIMPIGRGAYGIVCSLLNTETNELVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGLRDVIPPPLRREFNDVYIATELMDTDLHHIIRSNQNLSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNSNCDLKIIDFGLARPTLESDFMTEYVVTRWYRAPELLLNSSDYTSAIDVWSVGCIFMELMNKKPLFPGKDHVHQMRLLTELLGTPTEADLGLVKNEDARRYIRQLPQYPRQPLAQVFPHVHPAAIDLVDKMLTVDPTKRITVEEALAHPYLEKLHDVADEPICMEPFSFDFEQQQLDEEQIKEMIYREALALNPEYA*






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