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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G60250.1 | AT | zinc finger (C3HC4-type RING finger) family protein | JGI | N/A | IEA |
| GO:0000209 | GO-bp | protein polyubiquitination | EnsemblGenomes | N/A | IEA |
| GO:0006278 | GO-bp | RNA-dependent DNA biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0016567 | GO-bp | protein ubiquitination | EnsemblGenomes | N/A | IEA |
| GO:0032436 | GO-bp | positive regulation of proteasomal ubiquitin-dependent protein catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0000151 | GO-cc | ubiquitin ligase complex | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0003964 | GO-mf | RNA-directed DNA polymerase activity | EnsemblGenomes | N/A | IEA |
| GO:0004842 | GO-mf | ubiquitin-protein transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0031624 | GO-mf | ubiquitin conjugating enzyme binding | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0061630 | GO-mf | ubiquitin protein ligase activity | EnsemblGenomes | N/A | IEA |
| KOG1812 | KOG | Predicted E3 ubiquitin ligase | JGI | N/A | IEA |
| PTHR11685 | Panther | RBR FAMILY (RING FINGER AND IBR DOMAIN-CONTAINING) | JGI | N/A | IEA |
| PTHR11685:SF18 | Panther | SUBFAMILY NOT NAMED | JGI | N/A | IEA |
| PF01485 | PFAM | IBR domain | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| RTRP2 | probable E3 ubiquitin-protein ligase rbrA-like protein |
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Glyma.12g071900 not represented in the dataset |
Glyma.12g071900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma12g07640 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.12g071900.1 sequence-type=CDS polypeptide=Glyma.12g071900.1.p locus=Glyma.12g071900 ID=Glyma.12g071900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAGGACCGGGAACACAGCGAGGCGGAGACGCAAAAAATGAGGGAGGAACTCTGCCGTCGGATCCACGACGAGAAGGTGGCGAGGGAGATTTCCACGATTCCCGAGAAGGACTGGGAGCAGTGGGGCGACAACTTCGAGAAACCGTTCAGAGAGGGCTCGTCCTCTTCGTTGGGGAGTAGAGAGGAGGGCGTTGTTAGGGTTTACTTCAAGGGTTTGGTGAGCGAGGAAAACGTGAGGGGGCAGAATGTCGTGTTGTCTGGGATCGGGGTTGCGATTTGTGACCTAGGCGATAATCTGATATTCGAGGTTTCTAAGTCGCTCGTTGGGAATGACACTAGCAAGGTCGCTGCAGAGATTAAGGCTTTAATTGAGGCTTTCAATGCCGCCATTGCTTTGGACTTGAAGCGCGTCGTTTATTGCTGCGATTATTATCCCCTTTTCCAATTTGTGAGTGGAAAATGGCCTGCAAAACAGCGGAAGATTGCTATGTTGGTTGATCAAGTGGATCTGCTTCAAAGGAAGTTTTCATACTGCAATCCAAGGCTTGTGGCCAGACATAATGTCAAGTTTGCATTTAAGCTTGCAAGAGATGCCATTGAGTCTCAGTCCACGAGGCCTGCGGAATCTGGGAGTAGGAGGAGTTTGAATGAAACTTGTGTCATATGTTTGGAGGAAACTGATGCCAGTCAGATTTTTTCAGTTGATGGCTGTCAACACCGCTATTGCTTCTCGTGCATGAAACAACATGTGGAGGTGAAGTTACTTCATGGAATGGTGCCAAAGTGCCCTCACGAGGGGTGCAAGTATGAGCTTCTAGTCAACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACTGAGACCATGCAGCAACGAAAATTGGAAGCTTCAATTCCTGTTGCTGAAAAAATTTATTGCCCTTATCCTAGATGCTCTGCATTAATGTCAAAAACTAAGGTTTTAGAGTACTCGAGAAATATCATCGATCAATCTGAACAATCTGGAGTCAAGAAATGCCTAAAATGTCATGGTCTTTTCTGTTTTAATTGCAAGGTCCCTTGGCATAGTGGTATGACATGTAATACTTACAAAAGGATGAATCCTAATCCTCCTGCAGAAGATTTGAAGCTGAAGTTTCTTGCATCAAGGAGCCTATGGCGACAGTGTCTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGTGGTTACGAATTTTGCTATAATTGTGGAGCCGAGTGGAAGGACAAAAAAGCAACATGTGCATGCCCTCTTTGGGCCGAGGACAATATTTGGTTAGATGATCACGAGGAAGAGTTGGAAGATGATGATGATGATGATTATAACTCTGATTATTCTGATGGTTATTATTATTAA
>Glyma.12g071900.1.p sequence-type=predicted peptide transcript=Glyma.12g071900.1 locus=Glyma.12g071900 ID=Glyma.12g071900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKDREHSEAETQKMREELCRRIHDEKVAREISTIPEKDWEQWGDNFEKPFREGSSSSLGSREEGVVRVYFKGLVSEENVRGQNVVLSGIGVAICDLGDNLIFEVSKSLVGNDTSKVAAEIKALIEAFNAAIALDLKRVVYCCDYYPLFQFVSGKWPAKQRKIAMLVDQVDLLQRKFSYCNPRLVARHNVKFAFKLARDAIESQSTRPAESGSRRSLNETCVICLEETDASQIFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHEGCKYELLVNSCQKFLTQKLTETMQQRKLEASIPVAEKIYCPYPRCSALMSKTKVLEYSRNIIDQSEQSGVKKCLKCHGLFCFNCKVPWHSGMTCNTYKRMNPNPPAEDLKLKFLASRSLWRQCLKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKDKKATCACPLWAEDNIWLDDHEEELEDDDDDDYNSDYSDGYYY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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