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Report for Sequence Feature Glyma.12g071900

Feature Type:gene_model
Chromosome:Gm12
Start:5268146
stop:5272117
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g071900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G60250.1AT zinc finger (C3HC4-type RING finger) family protein JGI N/AIEA
GO:0000209GO-bp protein polyubiquitination EnsemblGenomesN/AIEA
GO:0006278GO-bp RNA-dependent DNA biosynthetic process EnsemblGenomesN/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0032436GO-bp positive regulation of proteasomal ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0000151GO-cc ubiquitin ligase complex EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003964GO-mf RNA-directed DNA polymerase activity EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein transferase activity EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0031624GO-mf ubiquitin conjugating enzyme binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0061630GO-mf ubiquitin protein ligase activity EnsemblGenomesN/AIEA
KOG1812 KOG Predicted E3 ubiquitin ligase JGI N/AIEA
PTHR11685Panther RBR FAMILY (RING FINGER AND IBR DOMAIN-CONTAINING) JGI N/AIEA
PTHR11685:SF18Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF01485PFAM IBR domain JGI N/AIEA

Proteins Associated with Glyma.12g071900
LocusGene SymbolProtein Name
RTRP2 probable E3 ubiquitin-protein ligase rbrA-like protein

Expression Patterns of Glyma.12g071900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.12g071900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g07640 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g071900
>Glyma.12g071900.1 sequence-type=CDS polypeptide=Glyma.12g071900.1.p locus=Glyma.12g071900 ID=Glyma.12g071900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGGACCGGGAACACAGCGAGGCGGAGACGCAAAAAATGAGGGAGGAACTCTGCCGTCGGATCCACGACGAGAAGGTGGCGAGGGAGATTTCCACGATTCCCGAGAAGGACTGGGAGCAGTGGGGCGACAACTTCGAGAAACCGTTCAGAGAGGGCTCGTCCTCTTCGTTGGGGAGTAGAGAGGAGGGCGTTGTTAGGGTTTACTTCAAGGGTTTGGTGAGCGAGGAAAACGTGAGGGGGCAGAATGTCGTGTTGTCTGGGATCGGGGTTGCGATTTGTGACCTAGGCGATAATCTGATATTCGAGGTTTCTAAGTCGCTCGTTGGGAATGACACTAGCAAGGTCGCTGCAGAGATTAAGGCTTTAATTGAGGCTTTCAATGCCGCCATTGCTTTGGACTTGAAGCGCGTCGTTTATTGCTGCGATTATTATCCCCTTTTCCAATTTGTGAGTGGAAAATGGCCTGCAAAACAGCGGAAGATTGCTATGTTGGTTGATCAAGTGGATCTGCTTCAAAGGAAGTTTTCATACTGCAATCCAAGGCTTGTGGCCAGACATAATGTCAAGTTTGCATTTAAGCTTGCAAGAGATGCCATTGAGTCTCAGTCCACGAGGCCTGCGGAATCTGGGAGTAGGAGGAGTTTGAATGAAACTTGTGTCATATGTTTGGAGGAAACTGATGCCAGTCAGATTTTTTCAGTTGATGGCTGTCAACACCGCTATTGCTTCTCGTGCATGAAACAACATGTGGAGGTGAAGTTACTTCATGGAATGGTGCCAAAGTGCCCTCACGAGGGGTGCAAGTATGAGCTTCTAGTCAACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACTGAGACCATGCAGCAACGAAAATTGGAAGCTTCAATTCCTGTTGCTGAAAAAATTTATTGCCCTTATCCTAGATGCTCTGCATTAATGTCAAAAACTAAGGTTTTAGAGTACTCGAGAAATATCATCGATCAATCTGAACAATCTGGAGTCAAGAAATGCCTAAAATGTCATGGTCTTTTCTGTTTTAATTGCAAGGTCCCTTGGCATAGTGGTATGACATGTAATACTTACAAAAGGATGAATCCTAATCCTCCTGCAGAAGATTTGAAGCTGAAGTTTCTTGCATCAAGGAGCCTATGGCGACAGTGTCTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGTGGTTACGAATTTTGCTATAATTGTGGAGCCGAGTGGAAGGACAAAAAAGCAACATGTGCATGCCCTCTTTGGGCCGAGGACAATATTTGGTTAGATGATCACGAGGAAGAGTTGGAAGATGATGATGATGATGATTATAACTCTGATTATTCTGATGGTTATTATTATTAA
Predicted protein sequences of Glyma.12g071900
>Glyma.12g071900.1.p sequence-type=predicted peptide transcript=Glyma.12g071900.1 locus=Glyma.12g071900 ID=Glyma.12g071900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKDREHSEAETQKMREELCRRIHDEKVAREISTIPEKDWEQWGDNFEKPFREGSSSSLGSREEGVVRVYFKGLVSEENVRGQNVVLSGIGVAICDLGDNLIFEVSKSLVGNDTSKVAAEIKALIEAFNAAIALDLKRVVYCCDYYPLFQFVSGKWPAKQRKIAMLVDQVDLLQRKFSYCNPRLVARHNVKFAFKLARDAIESQSTRPAESGSRRSLNETCVICLEETDASQIFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHEGCKYELLVNSCQKFLTQKLTETMQQRKLEASIPVAEKIYCPYPRCSALMSKTKVLEYSRNIIDQSEQSGVKKCLKCHGLFCFNCKVPWHSGMTCNTYKRMNPNPPAEDLKLKFLASRSLWRQCLKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKDKKATCACPLWAEDNIWLDDHEEELEDDDDDDYNSDYSDGYYY*






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