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Report for Sequence Feature Glyma.12g071100

Feature Type:gene_model
Chromosome:Gm12
Start:5204211
stop:5217887
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g071100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G45300.1AT isovaleryl-CoA-dehydrogenase JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0003995GO-mf acyl-CoA dehydrogenase activity EnsemblGenomesN/AIEA
GO:0003995GO-mf acyl-CoA dehydrogenase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016627GO-mf oxidoreductase activity, acting on the CH-CH group of donors EnsemblGenomesN/AIEA
GO:0016627GO-mf oxidoreductase activity, acting on the CH-CH group of donors JGI N/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding EnsemblGenomesN/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding JGI N/AIEA
KOG0141 KOG Isovaleryl-CoA dehydrogenase JGI N/AIEA
PTHR10909Panther ELECTRON TRANSPORT OXIDOREDUCTASE JGI N/AIEA
PTHR10909:SF121Panther VERY LONG-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL JGI N/AIEA
PF00441PFAM Acyl-CoA dehydrogenase, C-terminal domain JGI N/AIEA
PF02770PFAM Acyl-CoA dehydrogenase, middle domain JGI N/AIEA
PF02771PFAM Acyl-CoA dehydrogenase, N-terminal domain JGI N/AIEA
LEU-DEG2-PWYSoyCyc9 L-leucine degradation I Plant Metabolic Network ISS
GN7V-41755SoyCyc9-rxn 2-methylacyl-CoA dehydrogenase Plant Metabolic Network ISS

Expression Patterns of Glyma.12g071100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g071100 not represented in the dataset
Glyma.12g071100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.12g071100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g07570 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g071100
>Glyma.12g071100.1 sequence-type=CDS polypeptide=Glyma.12g071100.1.p locus=Glyma.12g071100 ID=Glyma.12g071100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCATAGGATCAGCACCGCAGGGTACATTTTTTCTGCAGTTTTCAGAAGGAAATCTCAGCCTCACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACGAAACTCAGATACAGTTTAAGGAAAGTGTTGCTCAATTTGCAACAGAAAATATTGCCCCTCATGCTTCCAAAATAGACCACACAAATTATTTCCCAAAGGAGGTGAACTTATGGAAAAGCATGGGAGAATTTAATCTCCTTGGGATTACTGCACCAGAGGAATATGGAGGGCTTGGCCTAGGTTACTTGTATCACTGTATAGCAATGGAAGAGATTAGCCGTGCTTCAGGTTCTGTTGGTCTTTCTTATGGTGCTCATTCAAACTTGTGTATCAATCAGCTGGTGAGGAATGGAAGCCCTGTTCAGAAAGAGAAATATTTACCAAAGCTTATTTCTGGGGATCATGTGGGAGCATTGGCAATGAGCGAGCCCAATTCTGGTTCTGATGTTGTCAGCATGAAATGCAAGGCTGATCGTGTAGATGGGGGCTATGTACTTAATGGGAACAAGATGTGGTGTACTAATGGGCCAGTTGCTCAAACATTAGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGGATTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACGTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGACGAAAATGTTCTTGGGAAAGAAGGGAAAGGAGTCTATGTCATGATGTCTGGGCTGGATCTGGAGAGACTTGTTTTGGCAGCTGGTCCTCTTGGTATTATGCAGGCATGTCTTGATGTTGTCCTTCCTTATGTTCGACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGGGGAAAATTGCTGACATGTATACTTCATTACAGTCCTCAAGGTCTTATGTGTATTCAGTAGCTCGGGACTGCGACAACGGAAAAATTGACCCAAAGGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCTTTGCAGGCTATACAATGTTTAGGTGGGAATGGTTATGTAAATGAATATCCCACTGGTCGTCTCTTGAGAGATGCCAAACTCTACGAGATTGGTGCAGGAACTAGTGAGATCAGAAGAATGATTATTGGACGTGAGCTCTTCAAGGAGTAA
Predicted protein sequences of Glyma.12g071100
>Glyma.12g071100.1.p sequence-type=predicted peptide transcript=Glyma.12g071100.1 locus=Glyma.12g071100 ID=Glyma.12g071100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHRISTAGYIFSAVFRRKSQPHSAAFSTSLLFDETQIQFKESVAQFATENIAPHASKIDHTNYFPKEVNLWKSMGEFNLLGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGSPVQKEKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDITAGSKGITAFIIEKGMPGFNTAQKLDKLGMRGSDTCELVFENCFVPDENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPIGEFQFIQGKIADMYTSLQSSRSYVYSVARDCDNGKIDPKDCAGAILCAAERATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRELFKE*






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