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Report for Sequence Feature Glyma.12g066000

Feature Type:gene_model
Chromosome:Gm12
Start:4857553
stop:4859148
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g066000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59780.2AT myb domain protein 59 JGI N/AIEA
AT5G59780.3AT myb domain protein 59 JGI N/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0030154GO-bp cell differentiation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0000981GO-mf RNA polymerase II transcription factor activity, sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0001135GO-mf transcription factor activity, RNA polymerase II transcription factor recruiting EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003682GO-mf chromatin binding JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0044212GO-mf transcription regulatory region DNA binding EnsemblGenomesN/AIEA
PTHR10641Panther MYB-LIKE DNA-BINDING PROTEIN MYB JGI N/AIEA
PF00249PFAM Myb-like DNA-binding domain JGI N/AIEA

Proteins Associated with Glyma.12g066000
LocusGene SymbolProtein Name
MYB145 MYB transcription factor MYB145

Expression Patterns of Glyma.12g066000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g066000
ParalogEvidenceComments
Glyma.11g142900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g066000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g07110 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.12g066000
>Glyma.12g066000.2 sequence-type=transcript locus=Glyma.12g066000 ID=Glyma.12g066000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATACCACTAGTACCAACATAGGTCTCCGTAAGTCTATCAAGTGAAGAATTAAAGTTAGAATAATATTCCCTACAATTAGCAGAAAAAATGGTTCAGCAAGAAATCCGAAGGGGTCCCTGGACAGAACAGGAGGACTACAAATTGGTGTATTTTGTTGGCATGTTCGGAGATCGTAGATGGGACTTTATAGCAAAGGTATCAGGTTTGAAGGTGGAGGGAGACTGTAAATAAAATAGGTATGAATATTTGGACATGCTAAGTTATACTATGAAGCACCCTTTAACCACCTCACTTTGTTGTAGGTTTGAATAGAACAGGTAAGAGTTGCAGATTACGGTGGGTTAATTACCTCCACCCCGATCTCAAACGAGGGAAGCTCACACCCCAAGAACAACACCTCGTCATGGACCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAGCTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGAAAGAAAAAGGCTCTGGAGAAAAAGCATGCATCAGCATCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTATCTTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGATGGGGTTAATTGGTGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTTTGTCAGGAGAAGAGAACAGCATTTATAACAACAATAATCTGCAACCTGTGTATGAAGAAGGGCATAGTGAAGAGGGCTGCAACTTCTCTTGTCCTCCACCAATGATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCCTCTGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCTCACTATGAACAAGGGAACGAATTTCTGACCGGCTAATTAGGAGATTCTTTTTTTTCTTTCTCTTTTCAATTATCAATATTTTGTTCTTATGTGTGCCATCTGTCACAATAAGAAGGCTTAAGTCTTAACCTGTACAGCATAGTATCTTTGAGCTTTCGCCATGGTCCTCCTCCATAGTGTGACACAGCTGTAATCGATCTCAAATGTCACTGTAGTCTATGTCAATGTGTTTGTGGTTTTACTTTAAAGAAAAATCCAATGGGGAGTGGTCATGTTATGAATTATGTAAAATACTATACATCAAGCACTTGTGCAAATTTAAGTTTTAATCTGATTTCGATGCCTAGCTATCAATTATAGCACTTTCATTTCAATTATATTATATTAATATCAGCC

>Glyma.12g066000.3 sequence-type=transcript locus=Glyma.12g066000 ID=Glyma.12g066000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATACCACTAGTACCAACATAGGTCTCCGTAAGTCTATCAAGTGAAGAATTAAAGTTAGAATAATATTCCCTACAATTAGCAGAAAAAATGGTTCAGCAAGAAATCCGAAGGGGTCCCTGGACAGAACAGGAGGACTACAAATTGGTGTATTTTGTTGGCATGTTCGGAGATCGTAGATGGGACTTTATAGCAAAGGTATCAGGTTTGAAGGTGGAGGGAGACTGTAAATAAAATAGGTTTGAATAGAACAGGTAAGAGTTGCAGATTACGGTGGGTTAATTACCTCCACCCCGATCTCAAACGAGGGAAGCTCACACCCCAAGAACAACACCTCGTCATGGACCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAGCTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGAAAGAAAAAGGCTCTGGAGAAAAAGCATGCATCAGCATCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTATCTTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGATGGGGTTAATTGGTGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTTTGTCAGGAGAAGAGAACAGCATTTATAACAACAATAATCTGCAACCTGTGTATGAAGAAGGGCATAGTGAAGAGGGCTGCAACTTCTCTTGTCCTCCACCAATGATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCCTCTGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCTCACTATGAACAAGGGAACGAATTTCTGACCGGCTAATTAGGAGATTCTTTTTTTTCTTTCTCTTTTCAATTATCAATATTTTGTTCTTATGTGTGCCATCTGTCACAATAAGAAGGCTTAAGTCTTAACCTGTACAGCATAGTATCTTTGAGCTTTCGCCATGGTCCTCCTCCATAGTGTGACACAGCTGTAATCGATCTCAAATGTCACTGTAGTCTATGTCAATGTGTTTGTGGTTTTACTTTAAAGAAAAATCCAATGGGGAGTGGTCATGTTATGAATTATGTAAAATACTATACATCAAGCACTTGTGCAAATTTAAGTTTTAATCTGATTTCGATGCCTAGCTATCAATTATAGCACTTTCATTTCAATTATATTATATTAATATCAGCC

>Glyma.12g066000.4 sequence-type=transcript locus=Glyma.12g066000 ID=Glyma.12g066000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATACCACTAGTACCAACATAGGTCTCCGTAAGTCTATCAAGTGAAGAATTAAAGTTAGAATAATATTCCCTACAATTAGCAGAAAAAATGGTTCAGCAAGAAATCCGAAGGGGTCCCTGGACAGAACAGGAGGACTACAAATTGGTGTATTTTGTTGGCATGTTCGGAGATCGTAGATGGGACTTTATAGCAAAGGTATCAGGTTTGAAGGTGGAGGGAGACTGTAAATAAAATAGATGGTCAAGAATTGCTCGCAAGCTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGAAAGAAAAAGGCTCTGGAGAAAAAGCATGCATCAGCATCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTATCTTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGATGGGGTTAATTGGTGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTTTGTCAGGAGAAGAGAACAGCATTTATAACAACAATAATCTGCAACCTGTGTATGAAGAAGGGCATAGTGAAGAGGGCTGCAACTTCTCTTGTCCTCCACCAATGATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCCTCTGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCTCACTATGAACAAGGGAACGAATTTCTGACCGGCTAATTAGGAGATTCTTTTTTTTCTTTCTCTTTTCAATTATCAATATTTTGTTCTTATGTGTGCCATCTGTCACAATAAGAAGGCTTAAGTCTTAACCTGTACAGCATAGTATCTTTGAGCTTTCGCCATGGTCCTCCTCCATAGTGTGACACAGCTGTAATCGATCTCAAATGTCACTGTAGTCTATGTCAATGTGTTTGTGGTTTTACTTTAAAGAAAAATCCAATGGGGAGTGGTCATGTTATGAATTATGTAAAATACTATACATCAAGCACTTGTGCAAATTTAAGTTTTAATCTGATTTCGATGCCTAGCTATCAATTATAGCACTTTCATTTCAATTATATTATATTAATATCAGCC
Coding sequences of Glyma.12g066000
>Glyma.12g066000.1 sequence-type=CDS polypeptide=Glyma.12g066000.1.p locus=Glyma.12g066000 ID=Glyma.12g066000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCAGCAAGAAATCCGAAGGGGTCCCTGGACAGAACAGGAGGACTACAAATTGGTGTATTTTGTTGGCATGTTCGGAGATCGTAGATGGGACTTTATAGCAAAGGTATCAGGTTTGAATAGAACAGGTAAGAGTTGCAGATTACGGTGGGTTAATTACCTCCACCCCGATCTCAAACGAGGGAAGCTCACACCCCAAGAACAACACCTCGTCATGGACCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAGCTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGAAAGAAAAAGGCTCTGGAGAAAAAGCATGCATCAGCATCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTATCTTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGATGGGGTTAATTGGTGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTTTGTCAGGAGAAGAGAACAGCATTTATAACAACAATAATCTGCAACCTGTGTATGAAGAAGGGCATAGTGAAGAGGGCTGCAACTTCTCTTGTCCTCCACCAATGATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCCTCTGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCTCACTATGAACAAGGGAACGAATTTCTGACCGGCTAA

>Glyma.12g066000.2 sequence-type=CDS polypeptide=Glyma.12g066000.2.p locus=Glyma.12g066000 ID=Glyma.12g066000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAGCTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGAAAGAAAAAGGCTCTGGAGAAAAAGCATGCATCAGCATCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTATCTTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGATGGGGTTAATTGGTGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTTTGTCAGGAGAAGAGAACAGCATTTATAACAACAATAATCTGCAACCTGTGTATGAAGAAGGGCATAGTGAAGAGGGCTGCAACTTCTCTTGTCCTCCACCAATGATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCCTCTGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCTCACTATGAACAAGGGAACGAATTTCTGACCGGCTAA

>Glyma.12g066000.3 sequence-type=CDS polypeptide=Glyma.12g066000.3.p locus=Glyma.12g066000 ID=Glyma.12g066000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAGCTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGAAAGAAAAAGGCTCTGGAGAAAAAGCATGCATCAGCATCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTATCTTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGATGGGGTTAATTGGTGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTTTGTCAGGAGAAGAGAACAGCATTTATAACAACAATAATCTGCAACCTGTGTATGAAGAAGGGCATAGTGAAGAGGGCTGCAACTTCTCTTGTCCTCCACCAATGATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCCTCTGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCTCACTATGAACAAGGGAACGAATTTCTGACCGGCTAA

>Glyma.12g066000.4 sequence-type=CDS polypeptide=Glyma.12g066000.4.p locus=Glyma.12g066000 ID=Glyma.12g066000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAAAGAAAAAGGCTCTGGAGAAAAAGCATGCATCAGCATCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTATCTTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGATGGGGTTAATTGGTGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTTTGTCAGGAGAAGAGAACAGCATTTATAACAACAATAATCTGCAACCTGTGTATGAAGAAGGGCATAGTGAAGAGGGCTGCAACTTCTCTTGTCCTCCACCAATGATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCCTCTGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCTCACTATGAACAAGGGAACGAATTTCTGACCGGCTAA
Predicted protein sequences of Glyma.12g066000
>Glyma.12g066000.1.p sequence-type=predicted peptide transcript=Glyma.12g066000.1 locus=Glyma.12g066000 ID=Glyma.12g066000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVQQEIRRGPWTEQEDYKLVYFVGMFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPDLKRGKLTPQEQHLVMDLHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKKALEKKHASASASSPVSSSCQSSLSSNNHVVDSHASKESFYDTGGYDDMMMGLIGGEKGYSMDDIWKDIVLSGEENSIYNNNNLQPVYEEGHSEEGCNFSCPPPMMIMPSPPSWDQYNISSQPLWVMDEEESNKMLFPTLSDQYFSHYEQGNEFLTG*

>Glyma.12g066000.2.p sequence-type=predicted peptide transcript=Glyma.12g066000.2 locus=Glyma.12g066000 ID=Glyma.12g066000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKKALEKKHASASASSPVSSSCQSSLSSNNHVVDSHASKESFYDTGGYDDMMMGLIGGEKGYSMDDIWKDIVLSGEENSIYNNNNLQPVYEEGHSEEGCNFSCPPPMMIMPSPPSWDQYNISSQPLWVMDEEESNKMLFPTLSDQYFSHYEQGNEFLTG*

>Glyma.12g066000.3.p sequence-type=predicted peptide transcript=Glyma.12g066000.3 locus=Glyma.12g066000 ID=Glyma.12g066000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKKALEKKHASASASSPVSSSCQSSLSSNNHVVDSHASKESFYDTGGYDDMMMGLIGGEKGYSMDDIWKDIVLSGEENSIYNNNNLQPVYEEGHSEEGCNFSCPPPMMIMPSPPSWDQYNISSQPLWVMDEEESNKMLFPTLSDQYFSHYEQGNEFLTG*

>Glyma.12g066000.4.p sequence-type=predicted peptide transcript=Glyma.12g066000.4 locus=Glyma.12g066000 ID=Glyma.12g066000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRKKKALEKKHASASASSPVSSSCQSSLSSNNHVVDSHASKESFYDTGGYDDMMMGLIGGEKGYSMDDIWKDIVLSGEENSIYNNNNLQPVYEEGHSEEGCNFSCPPPMMIMPSPPSWDQYNISSQPLWVMDEEESNKMLFPTLSDQYFSHYEQGNEFLTG*






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