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Report for Sequence Feature Glyma.12g057700

Feature Type:gene_model
Chromosome:Gm12
Start:4192499
stop:4196144
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g057700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G51310.1AT transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases JGI N/AIEA
GO:0006529GO-bp asparagine biosynthetic process JGI N/AIEA
GO:0008033GO-bp tRNA processing EnsemblGenomesN/AIEA
GO:0008033GO-bp tRNA processing JGI N/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0004066GO-mf asparagine synthase (glutamine-hydrolyzing) activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity JGI N/AIEA
PTHR11933Panther TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE JGI N/AIEA
PF03054PFAM tRNA methyl transferase JGI N/AIEA
PWY-6823SoyCyc9 molybdenum cofactor biosynthesis Plant Metabolic Network ISS
PWY0-1021SoyCyc9 L-alanine biosynthesis III Plant Metabolic Network ISS
GN7V-44489SoyCyc9-rxn cysteine desulfurase Plant Metabolic Network ISS

Expression Patterns of Glyma.12g057700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g057700 not represented in the dataset
Glyma.12g057700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g057700
ParalogEvidenceComments
Glyma.11g133500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g057700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g06161 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.12g057700
>Glyma.12g057700.2 sequence-type=transcript locus=Glyma.12g057700 ID=Glyma.12g057700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCAAGTGTGTTTTCCTGAAACGGATGAGGTGTCTGATATGTGGAAGGTGGCGGTGCCATGGAATTGGATTTGGAGGCCAATGGCTTCTCCGCCTCTAACTGCCTTCACATGCCAAAATCTCCACACGCTAAACCCTAGGCCTCGATGTCGCAGCTTCAAGCTTTTCTGTCGACCTTCTTTTTCCGCCGTCGCGCAGCCCTCGCCTCCTCTCTCCGGCGACCTTGACCGCTACCTCCGCTGCTCCATGCCGCAGAACTCGCCGCTTCGAGTCGCCGTTCTCGTCAGCGGAGGCGTCGATAGCAGCGTCGCTCTCCGGCTGCTCCACGCCGCCGGTCACTCCTGCACCGCTTTCTACCTCAAGATATGGTTCCAAATTTCGAGAACTTTTGGTCGGAGTGCCCCTGGGAAGAGGATTTGAAGTATGCTAAAGATGTTTGTAATCAGGTTGATGTGCCGTTAGAAGTTGTTCATTTAACCGATGAATACTGGAACAATGTGGTTTCTTACCTCATTGAAGAGTATAGTAGTGGCCGAACCCCTAACCCTGATGTTCTCTGCAATACAAGAATAAAGTTTGGTGCATTCTTGGATGCAATTGGTGGCATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATGTGCTGATTGGATGGATGAGCCTTCTGTTCTGGAACTATCACAAGACATGGTAAAGGATCAAACATACTTCCTTTCACACCTCTCACAATCCCAGCTGAGGCGACTTCTTTTTCCGCTTGGTTGTATTCCCAAGGATGAAGTCCGCAAGCTTGCCACAAAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTACCAGACATATTGGGGAGAGAGAAGGTATCATCCTGGAAGCTGAGACAGGAGATTTCCTTGGCAAACATCGGGGATTTTGGTTTTAAAAACAATGTAGTTTTTGTGTCAAGAAATTACTTTTCCTTTGACAAAAGAAGGCGTGTATTCTGTGTTGGCTCTTTTAAATGGCTTAGTGGGTTGCCCCCAGGCCAGACAAGTCAGCTTCAATGCAAGGTGAGACATGGTCCTGGATTCTATGATTGTAGCTTACAAATGGAAGTGGAAGGAGATGGCCAGTGTCGCTCTGCTGTTGTCTGCATATCTGAAGATGATCAAGGCCTAGCAGCTGGCCAGTTTGCGGCCTTCTATGAGGGAAGAACATGCATAGGTTCTGGTGTGATTTTGGAGTTCTGGGATGATCAGAGTTTTCCAGTATGTACAAAAGCTTTAGAAATTGCTAGGATGGAAGATAAATCGAAGATTGGGAATCCGGTAAAAATAAAAGTTAAACCAGATAACCCGCAAGTGTGTGATTCTGCAGAGTTAGCAAGTAAAACATCATAAAGGAATAAGAAATTCAAGAGTTGCTGGCACTAAACAAAACAGGCTGATGTGTCAGGGGAATGCAACTTCCATCTTCCCTTTCAATTGGCCACAACAAAGCATTCGCAAATGTGGGTATACACGTAGATTTTCTGATCTTTTGTTCTGTAGCGTTTTTATATGCATGTTTAGGGAAATAAGAAGTATTTTATAGAGAGAAGGATAGCTGTTTAAGGTGGGTGAGAAATTAGTAGCTTCCATTATTCTGTGTTTCCAATTAAAATGTGTATATACCTTGTCATGGTTTGCTTTAGACTTTATTCAGTTTATTCACTATGTACCTTAAGATGCAATTATTAAATGAAGAATTTCTTATTTTGGAATTTAATCAATGAAAAAATATTTACTATGGCATGGAGCCATG

>Glyma.12g057700.3 sequence-type=transcript locus=Glyma.12g057700 ID=Glyma.12g057700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCAAGTGTGTTTTCCTGAAACGGATGAGGTGTCTGATATGTGGAAGGTGGCGGTGCCATGGAATTGGATTTGGAGGCCAATGGCTTCTCCGCCTCTAACTGCCTTCACATGCCAAAATCTCCACACGCTAAACCCTAGGCCTCGATGTCGCAGCTTCAAGCTTTTCTGTCGACCTTCTTTTTCCGCCGTCGCGCAGCCCTCGCCTCCTCTCTCCGGCGACCTTGACCGCTACCTCCGCTGCTCCATGCCGCAGAACTCGCCGCTTCGAGTCGCCGTTCTCGTCAGCGGAGGCGTCGATAGCAGCGTCGCTCTCCGGCTGCTCCACGCCGCCGGTCACTCCTGCACCGCTTTCTACCTCAAGATATGGTTCCAAGAAGATTTCGAGAACTTTTGGTCGGAGTGCCCCTGGGAAGAGGATTTGAAGTATGCTAAAGATGTTTGTAATCAGGTTGATGTGCCGTTAGAAGTTGTTCATTTAACCGATGAATACTGGAACAATGTGGTTTCTTACCTCATTGAAGAGTATAGTAGTGGCCGAACCCCTAACCCTGATGTTCTCTGCAATACAAGAATAAAGTTTGGTGCATTCTTGGATGCAATTGGTGGCATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATGTGCTGATTGGATGGATGAGCCTTCTGTTCTGGAACTATCACAAGACATGGTAAAGGATCAAACATACTTCCTTTCACACCTCTCACAATCCCAGCTGAGGCGACTTCTTTTTCCGCTTGGTTGTATTCCCAAGGATGAAGTCCGCAAGCTTGCCACAAAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGACATATTGGGGAGAGAGAAGGTATCATCCTGGAAGCTGAGACAGGAGATTTCCTTGGCAAACATCGGGGATTTTGGTTTTAAAAACAATGTAGTTTTTGTGTCAAGAAATTACTTTTCCTTTGACAAAAGAAGGCGTGTATTCTGTGTTGGCTCTTTTAAATGGCTTAGTGGGTTGCCCCCAGGCCAGACAAGTCAGCTTCAATGCAAGGTGAGACATGGTCCTGGATTCTATGATTGTAGCTTACAAATGGAAGTGGAAGGAGATGGCCAGTGTCGCTCTGCTGTTGTCTGCATATCTGAAGATGATCAAGGCCTAGCAGCTGGCCAGTTTGCGGCCTTCTATGAGGGAAGAACATGCATAGGTTCTGGTGTGATTTTGGAGTTCTGGGATGATCAGAGTTTTCCAGTATGTACAAAAGCTTTAGAAATTGCTAGGATGGAAGATAAATCGAAGATTGGGAATCCGGTAAAAATAAAAGTTAAACCAGATAACCCGCAAGTGTGTGATTCTGCAGAGTTAGCAAGTAAAACATCATAAAGGAATAAGAAATTCAAGAGTTGCTGGCACTAAACAAAACAGGCTGATGTGTCAGGGGAATGCAACTTCCATCTTCCCTTTCAATTGGCCACAACAAAGCATTCGCAAATGTGGGTATACACGTAGATTTTCTGATCTTTTGTTCTGTAGCGTTTTTATATGCATGTTTAGGGAAATAAGAAGTATTTTATAGAGAGAAGGATAGCTGTTTAAGGTGGGTGAGAAATTAGTAGCTTCCATTATTCTGTGTTTCCAATTAAAATGTGTATATACCTTGTCATGGTTTGCTTTAGACTTTATTCAGTTTATTCACTATGTACCTTAAGATGCAATTATTAAATGAAGAATTTCTTATTTTGGAATTTAATCAA
Coding sequences of Glyma.12g057700
>Glyma.12g057700.1 sequence-type=CDS polypeptide=Glyma.12g057700.1.p locus=Glyma.12g057700 ID=Glyma.12g057700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGAAGGTGGCGGTGCCATGGAATTGGATTTGGAGGCCAATGGCTTCTCCGCCTCTAACTGCCTTCACATGCCAAAATCTCCACACGCTAAACCCTAGGCCTCGATGTCGCAGCTTCAAGCTTTTCTGTCGACCTTCTTTTTCCGCCGTCGCGCAGCCCTCGCCTCCTCTCTCCGGCGACCTTGACCGCTACCTCCGCTGCTCCATGCCGCAGAACTCGCCGCTTCGAGTCGCCGTTCTCGTCAGCGGAGGCGTCGATAGCAGCGTCGCTCTCCGGCTGCTCCACGCCGCCGGTCACTCCTGCACCGCTTTCTACCTCAAGATATGGTTCCAAGAAGATTTCGAGAACTTTTGGTCGGAGTGCCCCTGGGAAGAGGATTTGAAGTATGCTAAAGATGTTTGTAATCAGGTTGATGTGCCGTTAGAAGTTGTTCATTTAACCGATGAATACTGGAACAATGTGGTTTCTTACCTCATTGAAGAGTATAGTAGTGGCCGAACCCCTAACCCTGATGTTCTCTGCAATACAAGAATAAAGTTTGGTGCATTCTTGGATGCAATTGGTGGCATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATGTGCTGATTGGATGGATGAGCCTTCTGTTCTGGAACTATCACAAGACATGGTAAAGGATCAAACATACTTCCTTTCACACCTCTCACAATCCCAGCTGAGGCGACTTCTTTTTCCGCTTGGTTGTATTCCCAAGGATGAAGTCCGCAAGCTTGCCACAAAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTACCAGACATATTGGGGAGAGAGAAGGTATCATCCTGGAAGCTGAGACAGGAGATTTCCTTGGCAAACATCGGGGATTTTGGTTTTAA

>Glyma.12g057700.2 sequence-type=CDS polypeptide=Glyma.12g057700.2.p locus=Glyma.12g057700 ID=Glyma.12g057700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCCAAATTTCGAGAACTTTTGGTCGGAGTGCCCCTGGGAAGAGGATTTGAAGTATGCTAAAGATGTTTGTAATCAGGTTGATGTGCCGTTAGAAGTTGTTCATTTAACCGATGAATACTGGAACAATGTGGTTTCTTACCTCATTGAAGAGTATAGTAGTGGCCGAACCCCTAACCCTGATGTTCTCTGCAATACAAGAATAAAGTTTGGTGCATTCTTGGATGCAATTGGTGGCATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATGTGCTGATTGGATGGATGAGCCTTCTGTTCTGGAACTATCACAAGACATGGTAAAGGATCAAACATACTTCCTTTCACACCTCTCACAATCCCAGCTGAGGCGACTTCTTTTTCCGCTTGGTTGTATTCCCAAGGATGAAGTCCGCAAGCTTGCCACAAAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTACCAGACATATTGGGGAGAGAGAAGGTATCATCCTGGAAGCTGAGACAGGAGATTTCCTTGGCAAACATCGGGGATTTTGGTTTTAA

>Glyma.12g057700.3 sequence-type=CDS polypeptide=Glyma.12g057700.3.p locus=Glyma.12g057700 ID=Glyma.12g057700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGAAGGTGGCGGTGCCATGGAATTGGATTTGGAGGCCAATGGCTTCTCCGCCTCTAACTGCCTTCACATGCCAAAATCTCCACACGCTAAACCCTAGGCCTCGATGTCGCAGCTTCAAGCTTTTCTGTCGACCTTCTTTTTCCGCCGTCGCGCAGCCCTCGCCTCCTCTCTCCGGCGACCTTGACCGCTACCTCCGCTGCTCCATGCCGCAGAACTCGCCGCTTCGAGTCGCCGTTCTCGTCAGCGGAGGCGTCGATAGCAGCGTCGCTCTCCGGCTGCTCCACGCCGCCGGTCACTCCTGCACCGCTTTCTACCTCAAGATATGGTTCCAAGAAGATTTCGAGAACTTTTGGTCGGAGTGCCCCTGGGAAGAGGATTTGAAGTATGCTAAAGATGTTTGTAATCAGGTTGATGTGCCGTTAGAAGTTGTTCATTTAACCGATGAATACTGGAACAATGTGGTTTCTTACCTCATTGAAGAGTATAGTAGTGGCCGAACCCCTAACCCTGATGTTCTCTGCAATACAAGAATAAAGTTTGGTGCATTCTTGGATGCAATTGGTGGCATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATGTGCTGATTGGATGGATGAGCCTTCTGTTCTGGAACTATCACAAGACATGGTAAAGGATCAAACATACTTCCTTTCACACCTCTCACAATCCCAGCTGAGGCGACTTCTTTTTCCGCTTGGTTGTATTCCCAAGGATGAAGTCCGCAAGCTTGCCACAAAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGACATATTGGGGAGAGAGAAGGTATCATCCTGGAAGCTGA
Predicted protein sequences of Glyma.12g057700
>Glyma.12g057700.1.p sequence-type=predicted peptide transcript=Glyma.12g057700.1 locus=Glyma.12g057700 ID=Glyma.12g057700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWKVAVPWNWIWRPMASPPLTAFTCQNLHTLNPRPRCRSFKLFCRPSFSAVAQPSPPLSGDLDRYLRCSMPQNSPLRVAVLVSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEEDLKYAKDVCNQVDVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVIHPCADWMDEPSVLELSQDMVKDQTYFLSHLSQSQLRRLLFPLGCIPKDEVRKLATKFDLPNKDRKDSQGICFLGKIRFSEFVTRHIGEREGIILEAETGDFLGKHRGFWF*

>Glyma.12g057700.2.p sequence-type=predicted peptide transcript=Glyma.12g057700.2 locus=Glyma.12g057700 ID=Glyma.12g057700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVPNFENFWSECPWEEDLKYAKDVCNQVDVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVIHPCADWMDEPSVLELSQDMVKDQTYFLSHLSQSQLRRLLFPLGCIPKDEVRKLATKFDLPNKDRKDSQGICFLGKIRFSEFVTRHIGEREGIILEAETGDFLGKHRGFWF*

>Glyma.12g057700.3.p sequence-type=predicted peptide transcript=Glyma.12g057700.3 locus=Glyma.12g057700 ID=Glyma.12g057700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWKVAVPWNWIWRPMASPPLTAFTCQNLHTLNPRPRCRSFKLFCRPSFSAVAQPSPPLSGDLDRYLRCSMPQNSPLRVAVLVSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEEDLKYAKDVCNQVDVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVIHPCADWMDEPSVLELSQDMVKDQTYFLSHLSQSQLRRLLFPLGCIPKDEVRKLATKFDLPNKDRKDSQGICFLGKTYWGERRYHPGS*






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