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Report for Sequence Feature Glyma.12g054400

Feature Type:gene_model
Chromosome:Gm12
Start:3931921
stop:3936986
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g054400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G44450.1AT beta glucosidase 15 JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0009651GO-bp response to salt stress EnsemblGenomesN/AIEA
GO:0009725GO-bp response to hormone EnsemblGenomesN/AIEA
GO:0019762GO-bp glucosinolate catabolic process EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0008422GO-mf beta-glucosidase activity EnsemblGenomesN/AIEA
KOG0626 KOG Beta-glucosidase, lactase phlorizinhydrolase, and related proteins JGI N/AIEA
PTHR10353Panther GLYCOSYL HYDROLASE JGI N/AIEA
PF00232PFAM Glycosyl hydrolase family 1 JGI N/AIEA
PWY-6002SoyCyc9 lotaustralin degradation Plant Metabolic Network ISS
GN7V-47387SoyCyc9-rxn β-glucosidase Plant Metabolic Network ISS

Expression Patterns of Glyma.12g054400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g054400 not represented in the dataset
Glyma.12g054400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g054400
ParalogEvidenceComments
Glyma.11g130000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g054400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g05821 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.12g054400
>Glyma.12g054400.2 sequence-type=transcript locus=Glyma.12g054400 ID=Glyma.12g054400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATTGAATTTGAGCATGTTACCATTGCTCTGCGTTTTGTCTCTTTTTGTTACCTCGGCCATCACAATTACTCTTTCCAAGAGCGTTGCACCCATTCATGACGTTTCTTATCTCAACCGGAGCAGTTTCCCGCAAGGCTTTATTTTCGGGTCAGCATCCTCAGCATATCAGTATGAAGGTGCTGCAAGGGAAGGTGGAAAAGGACCGAGTATATGGGATACTTTCACTCATAAATACCCAGAAAAAATAAAAGATGGAAGTAATGGAGATGTAGCGGACGACTCATATCATCGGTATAAGGAGGATATTGGAATCATGAAGTATATGAATTTGGATGCTTATAGATTTTCCATTTCATGGTCTAGGGTACTACCGAAAGGAAAGCTTAGTGCAGGTGTAAATCATGAAGGAGTAAACTACTACAACAACCTCATCAATGAGCTCATGGCTAATGGTCTGCAACCATATGTGACCCTTTTCCATTGGGACGTTCCCCAAGCCTTAGAGGATGAGTATGGTGGTTTTTTAAGTCCTCACATTGTAGATGATTTTAGGGACTATGCTGAACTTTGCTTCAAGGAATTTGGCAATAGGGTGAAACATTGGATTACTTTGAATGAACCGAGGAGTGTGAGCAAGAATGGCTATGCAAATGGCAGGTTTGCACCTGGTCGGTGTTCTGATTGGCTAAAACTGAATTGCACAGGTGGTGATTCCGGAACTGAGCCCTATTTGACTTCGCACAACCAACTTCTTGCTCATGCTGCAGCAGCCAAACTGTATAAGACCAAGTATCAGGGTTTAATAGGGATTACCTTGAATTCTGACTGGTATGTGCCGGTTTCTAAAGAGAAATCTGATCAAGACGCTGCACGTAGGGGCCTTGACTTCATGTTTGGATGGTATATGGACCCACTCACAAAAGGTGAGTATCCAAAAACCATGCGATCTATGTTGGGAAACCGGCTACCAGAGTTCTCCAAAGAAGAAGCCAGGCAACTAAAAGGATCATTTGATTTTCTGGGCCTAAACTACTACTCATCCTTTTATGCTGCCCATGCACCCCACCAACGTGGTGCCAGACCAACCTTACAAACTGATGCTCTTGTTAATGTTACAAATCACCATGACGGCAAGCCCCTTGGTCCAATGGCTGCTTCTAACTGGTTGTGCATTTATCCACGAGGATTCCGGCAACTGTTGCTTTTCATCAAGAAGCAATACAACAACCCCTTAATTTACATTACTGAAAATGGTTATGACGAGTTCAACGATCCAACACTATCACTTGAAGAAAGCCTTTTAGATACTTACAGAGTCGATTACTTATATCGTCATCTTTATTATCTTCAAACTGCAATCAAGGATGGCGTGAATGTAAAGGGATATTTTGTATGGTCATTGCTGGATAATTTGGAGTGGAACTCTGGCTATACTGTGCGATTTGGACTCGTCTTCGTGAATTTCAGGGATGGCTTGAAAAGATACCCAAAACTCTCGGCACATTGGTTCAAGAATTTCCTCACTAAATCTTAG
Coding sequences of Glyma.12g054400
>Glyma.12g054400.1 sequence-type=CDS polypeptide=Glyma.12g054400.1.p locus=Glyma.12g054400 ID=Glyma.12g054400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATTGAATTTGAGCATGTTACCATTGCTCTGCGTTTTGTCTCTTTTTGTTACCTCGGCCATCACAATTACTCTTTCCAAGAGCGTTGCACCCATTCATGACGTTTCTTATCTCAACCGGAGCAGTTTCCCGCAAGGCTTTATTTTCGGGTCAGCATCCTCAGCATATCAGTATGAAGGTGCTGCAAGGGAAGGTGGAAAAGGACCGAGTATATGGGATACTTTCACTCATAAATACCCAGAAAAAATAAAAGATGGAAGTAATGGAGATGTAGCGGACGACTCATATCATCGGTATAAGGAGGATATTGGAATCATGAAGTATATGAATTTGGATGCTTATAGATTTTCCATTTCATGGTCTAGGGTACTACCGAAAGGAAAGCTTAGTGCAGGTGTAAATCATGAAGGAGTAAACTACTACAACAACCTCATCAATGAGCTCATGGCTAATGGTCTGCAACCATATGTGACCCTTTTCCATTGGGACGTTCCCCAAGCCTTAGAGGATGAGTATGGTGGTTTTTTAAGTCCTCACATTGTAGATGATTTTAGGGACTATGCTGAACTTTGCTTCAAGGAATTTGGCAATAGGGTGAAACATTGGATTACTTTGAATGAACCGAGGAGTGTGAGCAAGAATGGCTATGCAAATGGCAGGTTTGCACCTGGTCGGTGTTCTGATTGGCTAAAACTGAATTGCACAGGTGGTGATTCCGGAACTGAGCCCTATTTGACTTCGCACAACCAACTTCTTGCTCATGCTGCAGCAGCCAAACTGTATAAGACCAAGTATCAGACATCTCAAAAGGGTTTAATAGGGATTACCTTGAATTCTGACTGGTATGTGCCGGTTTCTAAAGAGAAATCTGATCAAGACGCTGCACGTAGGGGCCTTGACTTCATGTTTGGATGGTATATGGACCCACTCACAAAAGGTGAGTATCCAAAAACCATGCGATCTATGTTGGGAAACCGGCTACCAGAGTTCTCCAAAGAAGAAGCCAGGCAACTAAAAGGATCATTTGATTTTCTGGGCCTAAACTACTACTCATCCTTTTATGCTGCCCATGCACCCCACCAACGTGGTGCCAGACCAACCTTACAAACTGATGCTCTTGTTAATGTTACAAATCACCATGACGGCAAGCCCCTTGGTCCAATGGCTGCTTCTAACTGGTTGTGCATTTATCCACGAGGATTCCGGCAACTGTTGCTTTTCATCAAGAAGCAATACAACAACCCCTTAATTTACATTACTGAAAATGGTTATGACGAGTTCAACGATCCAACACTATCACTTGAAGAAAGCCTTTTAGATACTTACAGAGTCGATTACTTATATCGTCATCTTTATTATCTTCAAACTGCAATCAAGGATGGCGTGAATGTAAAGGGATATTTTGTATGGTCATTGCTGGATAATTTGGAGTGGAACTCTGGCTATACTGTGCGATTTGGACTCGTCTTCGTGAATTTCAGGGATGGCTTGAAAAGATACCCAAAACTCTCGGCACATTGGTTCAAGAATTTCCTCACTAAATCTTAG

>Glyma.12g054400.2 sequence-type=CDS polypeptide=Glyma.12g054400.2.p locus=Glyma.12g054400 ID=Glyma.12g054400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATTGAATTTGAGCATGTTACCATTGCTCTGCGTTTTGTCTCTTTTTGTTACCTCGGCCATCACAATTACTCTTTCCAAGAGCGTTGCACCCATTCATGACGTTTCTTATCTCAACCGGAGCAGTTTCCCGCAAGGCTTTATTTTCGGGTCAGCATCCTCAGCATATCAGTATGAAGGTGCTGCAAGGGAAGGTGGAAAAGGACCGAGTATATGGGATACTTTCACTCATAAATACCCAGAAAAAATAAAAGATGGAAGTAATGGAGATGTAGCGGACGACTCATATCATCGGTATAAGGAGGATATTGGAATCATGAAGTATATGAATTTGGATGCTTATAGATTTTCCATTTCATGGTCTAGGGTACTACCGAAAGGAAAGCTTAGTGCAGGTGTAAATCATGAAGGAGTAAACTACTACAACAACCTCATCAATGAGCTCATGGCTAATGGTCTGCAACCATATGTGACCCTTTTCCATTGGGACGTTCCCCAAGCCTTAGAGGATGAGTATGGTGGTTTTTTAAGTCCTCACATTGTAGATGATTTTAGGGACTATGCTGAACTTTGCTTCAAGGAATTTGGCAATAGGGTGAAACATTGGATTACTTTGAATGAACCGAGGAGTGTGAGCAAGAATGGCTATGCAAATGGCAGGTTTGCACCTGGTCGGTGTTCTGATTGGCTAAAACTGAATTGCACAGGTGGTGATTCCGGAACTGAGCCCTATTTGACTTCGCACAACCAACTTCTTGCTCATGCTGCAGCAGCCAAACTGTATAAGACCAAGTATCAGGGTTTAATAGGGATTACCTTGAATTCTGACTGGTATGTGCCGGTTTCTAAAGAGAAATCTGATCAAGACGCTGCACGTAGGGGCCTTGACTTCATGTTTGGATGGTATATGGACCCACTCACAAAAGGTGAGTATCCAAAAACCATGCGATCTATGTTGGGAAACCGGCTACCAGAGTTCTCCAAAGAAGAAGCCAGGCAACTAAAAGGATCATTTGATTTTCTGGGCCTAAACTACTACTCATCCTTTTATGCTGCCCATGCACCCCACCAACGTGGTGCCAGACCAACCTTACAAACTGATGCTCTTGTTAATGTTACAAATCACCATGACGGCAAGCCCCTTGGTCCAATGGCTGCTTCTAACTGGTTGTGCATTTATCCACGAGGATTCCGGCAACTGTTGCTTTTCATCAAGAAGCAATACAACAACCCCTTAATTTACATTACTGAAAATGGTTATGACGAGTTCAACGATCCAACACTATCACTTGAAGAAAGCCTTTTAGATACTTACAGAGTCGATTACTTATATCGTCATCTTTATTATCTTCAAACTGCAATCAAGGATGGCGTGAATGTAAAGGGATATTTTGTATGGTCATTGCTGGATAATTTGGAGTGGAACTCTGGCTATACTGTGCGATTTGGACTCGTCTTCGTGAATTTCAGGGATGGCTTGAAAAGATACCCAAAACTCTCGGCACATTGGTTCAAGAATTTCCTCACTAAATCTTAG
Predicted protein sequences of Glyma.12g054400
>Glyma.12g054400.1.p sequence-type=predicted peptide transcript=Glyma.12g054400.1 locus=Glyma.12g054400 ID=Glyma.12g054400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALNLSMLPLLCVLSLFVTSAITITLSKSVAPIHDVSYLNRSSFPQGFIFGSASSAYQYEGAAREGGKGPSIWDTFTHKYPEKIKDGSNGDVADDSYHRYKEDIGIMKYMNLDAYRFSISWSRVLPKGKLSAGVNHEGVNYYNNLINELMANGLQPYVTLFHWDVPQALEDEYGGFLSPHIVDDFRDYAELCFKEFGNRVKHWITLNEPRSVSKNGYANGRFAPGRCSDWLKLNCTGGDSGTEPYLTSHNQLLAHAAAAKLYKTKYQTSQKGLIGITLNSDWYVPVSKEKSDQDAARRGLDFMFGWYMDPLTKGEYPKTMRSMLGNRLPEFSKEEARQLKGSFDFLGLNYYSSFYAAHAPHQRGARPTLQTDALVNVTNHHDGKPLGPMAASNWLCIYPRGFRQLLLFIKKQYNNPLIYITENGYDEFNDPTLSLEESLLDTYRVDYLYRHLYYLQTAIKDGVNVKGYFVWSLLDNLEWNSGYTVRFGLVFVNFRDGLKRYPKLSAHWFKNFLTKS*

>Glyma.12g054400.2.p sequence-type=predicted peptide transcript=Glyma.12g054400.2 locus=Glyma.12g054400 ID=Glyma.12g054400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALNLSMLPLLCVLSLFVTSAITITLSKSVAPIHDVSYLNRSSFPQGFIFGSASSAYQYEGAAREGGKGPSIWDTFTHKYPEKIKDGSNGDVADDSYHRYKEDIGIMKYMNLDAYRFSISWSRVLPKGKLSAGVNHEGVNYYNNLINELMANGLQPYVTLFHWDVPQALEDEYGGFLSPHIVDDFRDYAELCFKEFGNRVKHWITLNEPRSVSKNGYANGRFAPGRCSDWLKLNCTGGDSGTEPYLTSHNQLLAHAAAAKLYKTKYQGLIGITLNSDWYVPVSKEKSDQDAARRGLDFMFGWYMDPLTKGEYPKTMRSMLGNRLPEFSKEEARQLKGSFDFLGLNYYSSFYAAHAPHQRGARPTLQTDALVNVTNHHDGKPLGPMAASNWLCIYPRGFRQLLLFIKKQYNNPLIYITENGYDEFNDPTLSLEESLLDTYRVDYLYRHLYYLQTAIKDGVNVKGYFVWSLLDNLEWNSGYTVRFGLVFVNFRDGLKRYPKLSAHWFKNFLTKS*






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