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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G44450.1 | AT | beta glucosidase 15 | JGI | N/A | IEA |
| AT5G42260.1 | AT | beta glucosidase 12 | JGI | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0009651 | GO-bp | response to salt stress | EnsemblGenomes | N/A | IEA |
| GO:0009725 | GO-bp | response to hormone | EnsemblGenomes | N/A | IEA |
| GO:0019762 | GO-bp | glucosinolate catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005618 | GO-cc | cell wall | EnsemblGenomes | N/A | IEA |
| GO:0004553 | GO-mf | hydrolase activity, hydrolyzing O-glycosyl compounds | EnsemblGenomes | N/A | IEA |
| GO:0004553 | GO-mf | hydrolase activity, hydrolyzing O-glycosyl compounds | JGI | N/A | IEA |
| GO:0008422 | GO-mf | beta-glucosidase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016798 | GO-mf | hydrolase activity, acting on glycosyl bonds | EnsemblGenomes | N/A | IEA |
| KOG0626 | KOG | Beta-glucosidase, lactase phlorizinhydrolase, and related proteins | JGI | N/A | IEA |
| PTHR10353 | Panther | GLYCOSYL HYDROLASE | JGI | N/A | IEA |
| PF00232 | PFAM | Glycosyl hydrolase family 1 | JGI | N/A | IEA |
| GN7V-46679 | SoyCyc9-rxn | β-glucosidase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| ICHG | isoflavone conjugate-specific beta-glucosidase |
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Glyma.12g053800 not represented in the dataset |
Glyma.12g053800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.11g129200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma12g05770 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.12g053800.2 sequence-type=transcript locus=Glyma.12g053800 ID=Glyma.12g053800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 TGGACGTGTTCAAACTTAAGCTAAACATCAACATGATGGTACGTGATTGGTGTAAGGTTTGAGTCCTGAGTATATAGATATATAGAGACAACAAATATTTAAAGTAATTAAGCACATGCATGGGATAGTTTTGGAGTATAAAATGAGTGTGATGGCACATAGTGTTGACACAGAAAATGGACTCGAACGGCTACTTGGTAGTTGGAGTGGTAGCTTTTGCTCTACTTTGCTCATTCAGAGTTTCTTTGACAGATTCAGTTCCATTATTTTCGCCTGTTCATGACGCTGCTTCTTTGACTCGCAACTCTTTCCCTGCTGGCTTCATCTTTGGGGCTGGATCCTCAGCCTACCAGTTCGAAGGAGCAGCAAAGGAAGGTGGAAGAGGACCAAGCATATGGGATACCTTCACACATAACCATCCAGAAAAGATAAGAGATGGAGCCAATGGAGATGTCGCCGTTGACCAATATCACCGCTACAAGGAAGATGTTAAGATCATGAAGGATATGAATTTGGATTCATACAGATTCTCAATCTCTTGGCCTAGAATACTACCCAAAGGAAAGCTCAGTGGTGGTGTAAATCAAGAAGGAATCAATTATTACAACAACCTCATCAATGAGCTATTGGCTAATGGTGTACTGCCATATGTGACTCTTTTTCATTGGGATCTTCCCCAAGCTTTGGAAGATGAGTATGGTGGTTTCTTAAGCTCCCATATAGTAGATGATTTTCAAGACTATGCGGATCTTTGCTTTAAGGAATTTGGAGATAGGGTGAAGTTTTGGACTACTTTGAATGAACCATGGTTGTTCAGCCAGGGTGGCTATGCAACCGGAGCGACGGCACCAGGAAGATGTACCGGTCCACAATGCCTCGGTGGTGATGCTGGCACTGAACCTTACATAGTTACACACAATCAAATTCTTGCTCATGCAGCTGCTGTTCATGTGTACAAGACTAAGTATCAGGCACATCAGAAAGGCAAGATAGGTATAACGTTGGTAAGTAACTGGTTCATACCGCTTGCAGAGAATAGCACATCAGACATAAAGGCTGCGAGAAGGGCAATTGACTTTCAATATGGATGGTATATGGAACCATTAACAAAAGGAGAGTATCCTAAAAACATGCGAGCCCTGGTGGGAAGTAGATTGCCTAAGTTCACCAAATGGCAAGCCAAGCTAGTGAATGGATCATTTGATTTTATTGGCTTAAACTATTACTCCTCTGGTTATATTAATGGTGTCCCTCCAAGCAACGACAAACCCAATTTTCTAACAGATTCTCGCACCAACACTTCATTTGAACGCAATGGAAGACCCCTAGGTCTAAGGGCCGCTTCAGTTTGGATATACTTTTATCCAAGGGGACTTCTAGATCTTCTGTTATATACCAAGGAAAAATACAATAACCCTTTGATTTACATCACCGAAAATGGTAAATACGCTAATTCATTATGTTCCCCCGCCCCCCTTGGATCTTATATTGAGATTTAAATCTAGATAAAATATATGAGAATATATATTGAACAATTGATTATATATTATATAAATGCATGGTTATATTTAATTTCTCTTTTTCTAATCTTTTTAAAAGACTATGTATGATATTTTGTATTACATTTGTATACTTTATTTAACTTGCAGGTATGAACGAATTCAATGATCCAACCCTTTCCGTGGAAGAAGCTCTCATGGATATTTATCGAATTGATTATTATTATCGTCATTTCTTTTATCTTCGATCAGCAATTAAGGCTGGCGCAAACGTTAAGGGATTTTTTGCATGGTCATTTTTGGACTGTAATGAATGGTTTGCAGGGTTCACTGTTCGGTTTGGATTAAACTTTGTAGATTACAAAGATGGCTTAAAAAGGTACCCTAAGCTTTCTGCTCAATGGTACAAGAACTTTCTGAAAAGAAACTAGTGTTAGACCCACCGTTTGAAAGCTATGCAGCACCTAAAAACGGTTAGGTTAAGCTCAATGTTTGTAGTTGTAGCTAATTCCACGTATAAGTCATTAGGTTGTTGTTTTCTGTTAGAATAATTTCATGGCACACTACTAAGTGTCCTGCACCAGCACAGCTATAAATTAATATGTTATAGCTGATCCttcatgtatcggtttgattttgaatgttatctcagaattaagattcagtttcagtttcaACAATTATAATCTTC
>Glyma.12g053800.1 sequence-type=CDS polypeptide=Glyma.12g053800.1.p locus=Glyma.12g053800 ID=Glyma.12g053800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGACTCGAACGGCTACTTGGTAGTTGGAGTGGTAGCTTTTGCTCTACTTTGCTCATTCAGAGTTTCTTTGACAGATTCAGTTCCATTATTTTCGCCTGTTCATGACGCTGCTTCTTTGACTCGCAACTCTTTCCCTGCTGGCTTCATCTTTGGGGCTGGATCCTCAGCCTACCAGTTCGAAGGAGCAGCAAAGGAAGGTGGAAGAGGACCAAGCATATGGGATACCTTCACACATAACCATCCAGAAAAGATAAGAGATGGAGCCAATGGAGATGTCGCCGTTGACCAATATCACCGCTACAAGGAAGATGTTAAGATCATGAAGGATATGAATTTGGATTCATACAGATTCTCAATCTCTTGGCCTAGAATACTACCCAAAGGAAAGCTCAGTGGTGGTGTAAATCAAGAAGGAATCAATTATTACAACAACCTCATCAATGAGCTATTGGCTAATGGTGTACTGCCATATGTGACTCTTTTTCATTGGGATCTTCCCCAAGCTTTGGAAGATGAGTATGGTGGTTTCTTAAGCTCCCATATAGTAGATGATTTTCAAGACTATGCGGATCTTTGCTTTAAGGAATTTGGAGATAGGGTGAAGTTTTGGACTACTTTGAATGAACCATGGTTGTTCAGCCAGGGTGGCTATGCAACCGGAGCGACGGCACCAGGAAGATGTACCGGTCCACAATGCCTCGGTGGTGATGCTGGCACTGAACCTTACATAGTTACACACAATCAAATTCTTGCTCATGCAGCTGCTGTTCATGTGTACAAGACTAAGTATCAGGCACATCAGAAAGGCAAGATAGGTATAACGTTGGTAAGTAACTGGTTCATACCGCTTGCAGAGAATAGCACATCAGACATAAAGGCTGCGAGAAGGGCAATTGACTTTCAATATGGATGGTATATGGAACCATTAACAAAAGGAGAGTATCCTAAAAACATGCGAGCCCTGGTGGGAAGTAGATTGCCTAAGTTCACCAAATGGCAAGCCAAGCTAGTGAATGGATCATTTGATTTTATTGGCTTAAACTATTACTCCTCTGGTTATATTAATGGTGTCCCTCCAAGCAACGACAAACCCAATTTTCTAACAGATTCTCGCACCAACACTTCATTTGAACGCAATGGAAGACCCCTAGGTCTAAGGGCCGCTTCAGTTTGGATATACTTTTATCCAAGGGGACTTCTAGATCTTCTGTTATATACCAAGGAAAAATACAATAACCCTTTGATTTACATCACCGAAAATGGTATGAACGAATTCAATGATCCAACCCTTTCCGTGGAAGAAGCTCTCATGGATATTTATCGAATTGATTATTATTATCGTCATTTCTTTTATCTTCGATCAGCAATTAAGGCTGGCGCAAACGTTAAGGGATTTTTTGCATGGTCATTTTTGGACTGTAATGAATGGTTTGCAGGGTTCACTGTTCGGTTTGGATTAAACTTTGTAGATTACAAAGATGGCTTAAAAAGGTACCCTAAGCTTTCTGCTCAATGGTACAAGAACTTTCTGAAAAGAAACTAG >Glyma.12g053800.2 sequence-type=CDS polypeptide=Glyma.12g053800.2.p locus=Glyma.12g053800 ID=Glyma.12g053800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGACTCGAACGGCTACTTGGTAGTTGGAGTGGTAGCTTTTGCTCTACTTTGCTCATTCAGAGTTTCTTTGACAGATTCAGTTCCATTATTTTCGCCTGTTCATGACGCTGCTTCTTTGACTCGCAACTCTTTCCCTGCTGGCTTCATCTTTGGGGCTGGATCCTCAGCCTACCAGTTCGAAGGAGCAGCAAAGGAAGGTGGAAGAGGACCAAGCATATGGGATACCTTCACACATAACCATCCAGAAAAGATAAGAGATGGAGCCAATGGAGATGTCGCCGTTGACCAATATCACCGCTACAAGGAAGATGTTAAGATCATGAAGGATATGAATTTGGATTCATACAGATTCTCAATCTCTTGGCCTAGAATACTACCCAAAGGAAAGCTCAGTGGTGGTGTAAATCAAGAAGGAATCAATTATTACAACAACCTCATCAATGAGCTATTGGCTAATGGTGTACTGCCATATGTGACTCTTTTTCATTGGGATCTTCCCCAAGCTTTGGAAGATGAGTATGGTGGTTTCTTAAGCTCCCATATAGTAGATGATTTTCAAGACTATGCGGATCTTTGCTTTAAGGAATTTGGAGATAGGGTGAAGTTTTGGACTACTTTGAATGAACCATGGTTGTTCAGCCAGGGTGGCTATGCAACCGGAGCGACGGCACCAGGAAGATGTACCGGTCCACAATGCCTCGGTGGTGATGCTGGCACTGAACCTTACATAGTTACACACAATCAAATTCTTGCTCATGCAGCTGCTGTTCATGTGTACAAGACTAAGTATCAGGCACATCAGAAAGGCAAGATAGGTATAACGTTGGTAAGTAACTGGTTCATACCGCTTGCAGAGAATAGCACATCAGACATAAAGGCTGCGAGAAGGGCAATTGACTTTCAATATGGATGGTATATGGAACCATTAACAAAAGGAGAGTATCCTAAAAACATGCGAGCCCTGGTGGGAAGTAGATTGCCTAAGTTCACCAAATGGCAAGCCAAGCTAGTGAATGGATCATTTGATTTTATTGGCTTAAACTATTACTCCTCTGGTTATATTAATGGTGTCCCTCCAAGCAACGACAAACCCAATTTTCTAACAGATTCTCGCACCAACACTTCATTTGAACGCAATGGAAGACCCCTAGGTCTAAGGGCCGCTTCAGTTTGGATATACTTTTATCCAAGGGGACTTCTAGATCTTCTGTTATATACCAAGGAAAAATACAATAACCCTTTGATTTACATCACCGAAAATGGTAAATACGCTAATTCATTATGTTCCCCCGCCCCCCTTGGATCTTATATTGAGATTTAA
>Glyma.12g053800.1.p sequence-type=predicted peptide transcript=Glyma.12g053800.1 locus=Glyma.12g053800 ID=Glyma.12g053800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDSNGYLVVGVVAFALLCSFRVSLTDSVPLFSPVHDAASLTRNSFPAGFIFGAGSSAYQFEGAAKEGGRGPSIWDTFTHNHPEKIRDGANGDVAVDQYHRYKEDVKIMKDMNLDSYRFSISWPRILPKGKLSGGVNQEGINYYNNLINELLANGVLPYVTLFHWDLPQALEDEYGGFLSSHIVDDFQDYADLCFKEFGDRVKFWTTLNEPWLFSQGGYATGATAPGRCTGPQCLGGDAGTEPYIVTHNQILAHAAAVHVYKTKYQAHQKGKIGITLVSNWFIPLAENSTSDIKAARRAIDFQYGWYMEPLTKGEYPKNMRALVGSRLPKFTKWQAKLVNGSFDFIGLNYYSSGYINGVPPSNDKPNFLTDSRTNTSFERNGRPLGLRAASVWIYFYPRGLLDLLLYTKEKYNNPLIYITENGMNEFNDPTLSVEEALMDIYRIDYYYRHFFYLRSAIKAGANVKGFFAWSFLDCNEWFAGFTVRFGLNFVDYKDGLKRYPKLSAQWYKNFLKRN* >Glyma.12g053800.2.p sequence-type=predicted peptide transcript=Glyma.12g053800.2 locus=Glyma.12g053800 ID=Glyma.12g053800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDSNGYLVVGVVAFALLCSFRVSLTDSVPLFSPVHDAASLTRNSFPAGFIFGAGSSAYQFEGAAKEGGRGPSIWDTFTHNHPEKIRDGANGDVAVDQYHRYKEDVKIMKDMNLDSYRFSISWPRILPKGKLSGGVNQEGINYYNNLINELLANGVLPYVTLFHWDLPQALEDEYGGFLSSHIVDDFQDYADLCFKEFGDRVKFWTTLNEPWLFSQGGYATGATAPGRCTGPQCLGGDAGTEPYIVTHNQILAHAAAVHVYKTKYQAHQKGKIGITLVSNWFIPLAENSTSDIKAARRAIDFQYGWYMEPLTKGEYPKNMRALVGSRLPKFTKWQAKLVNGSFDFIGLNYYSSGYINGVPPSNDKPNFLTDSRTNTSFERNGRPLGLRAASVWIYFYPRGLLDLLLYTKEKYNNPLIYITENGKYANSLCSPAPLGSYIEI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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