Glyma.12g053500

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Report for Sequence Feature Glyma.12g053500

Feature Type:	gene_model
Chromosome:	Gm12
Start:	3838105
stop:	3845992
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12g053500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65430.1	AT	IBR domain-containing protein	JGI	N/A	IEA
AT2G31510.1	AT	IBR domain-containing protein	JGI	N/A	IEA
GO:0000209	GO-bp	protein polyubiquitination	EnsemblGenomes	N/A	IEA
GO:0016567	GO-bp	protein ubiquitination	EnsemblGenomes	N/A	IEA
GO:0032436	GO-bp	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	EnsemblGenomes	N/A	IEA
GO:0000151	GO-cc	ubiquitin ligase complex	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0004842	GO-mf	ubiquitin-protein transferase activity	EnsemblGenomes	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	JGI	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
GO:0031624	GO-mf	ubiquitin conjugating enzyme binding	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
GO:0061630	GO-mf	ubiquitin protein ligase activity	EnsemblGenomes	N/A	IEA
KOG1815	KOG	Predicted E3 ubiquitin ligase	JGI	N/A	IEA
PTHR11685	Panther	RBR FAMILY (RING FINGER AND IBR DOMAIN-CONTAINING)	JGI	N/A	IEA
PTHR11685:SF10	Panther	E3 UBIQUITIN-PROTEIN LIGASE ARIH1	JGI	N/A	IEA
PF01485	PFAM	IBR domain	JGI	N/A	IEA

Proteins Associated with Glyma.12g053500

Locus	Gene Symbol	Protein Name
	ARI2	putative E3 ubiquitin-protein ligase ARI2

Expression Patterns of Glyma.12g053500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.12g053500

Paralog	Evidence	Comments
Glyma.11g129000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g053500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma12g05740	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.12g053500

Limit To All Plant Sequences

>Glyma.12g053500.2 sequence-type=transcript locus=Glyma.12g053500 ID=Glyma.12g053500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTCCTTTTTCGATTTTGTTACGACGAGGCACACACCAAAGTAGAGAAATTGTGACCCAATCTAATCAATTTAGTCTTTGAAATTGTAAAAGGCCAAGTTTCTGAAATTGTTGTGATTTCAGGAATTAAACTGTCAATTGATTGGATGCTCCTAATTCCATGACTAATTAGGGAAATTACGAGTTCCAGTTGAGGTTTTAGGGACTAATTCAGCGTATTAATCATTTATTTAGTTATGGTGTGATAGAAATGTATGCTCAACTTATCTTCTTAGCACTAATCATTTCTTTATATATATTGAGAGAAGAAGAGGTTGGTTTCAATGGTTAGATGATTTTATTCCTAAGGTTCATTTTAGTCATATTCATGAAAATTCGTTTTTTTTCCCCTTGGTTTTGCATGGATTGGATTGAATGTGAGTTCTACAGTTTCCTGTTCAAGAAACCGTGTTGTTGCCGGATGCTCCAATTTTTTGGTTTCTGCAATCACATATCAGTTTCCCACTAATTTTCTTATACCTGTTTTGGTTTCAGCAAAATTTTACCATATTGAAGGAATCCGATATACGACTAAGACAGGAAGATGACGTCACTAGAGTAGCAACGGTTCTTTCCATATCAAGGGTTTTTGCAAGCATACTACTCCGTCACCACAATTGGAGCGTCAGTAGAGTGCACGATGCATGGTTTGCTGATGAAGAACGAGTCCGAAAAGCAGTTGGTTTGTTGGAGAAGCCAATTGTCCAGCATCCTAATACTAGAGAGCTTACTTGCGGTATCTGTTTTGAAAATTATCCTCGTGCTAGGATTGAAATGGCTTCCTGTGGGCATCCCTATTGTATCTCATGTTGGGAAGGCTATATCAGCACATCCATTAATGATGGTCCTGGATGTTTGATGTTGAGATGTCCTGATCCCACTTGTGATGCTGCTATTGGTCAAGATATGATTAATCTTCTAGTGTCGGATGAAGATAAGCAGAAATATGCACGTTACCTACTTAGATCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTACTGGAAATTATGATGTCTCTTGCCTCTGTTCATATGGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGCCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGTAAGCGACCAATTGAAAAAAATCATGGGTGCATGCACATGACATGCACTCCACCCTGTAAATTTGAATTTTGCTGGCTATGCGTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCAAAGAATTCGCTGGAGAGATACACTCATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACAGCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCACAGCTTAAGTTCATAACTGAAGCCTGGCTACAAATAATTGAGTGTAGAAGAGTGCTGAAATGGACATATGCATATGGGTTCTATTTGCCGGAGCATGAGCATGCAAAAAAGCAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGCGCAGAAAAGGAACTACAGCCATTCTTAAGTGCTGATGATTCATCTAGAGAATTCAATGACTTTCGTACAAAGCTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTAAGGGCATTAGAGAATGGTCTATCTGATGTGGGTAGTAATGGAGCTGCCTTCAGCAAAGCAACGAGCTCAAAAAATGCTGCTGGGAGCAGTAAGGGGAGATCTGGAAGAGGAAAGGGAACTTTTCGAAGCAGCACGCCCAGCAAAATGAATGATGATAGTCATTGGTGTTGCGAGCATTGTACCTATGCAAATGCCAAATCTGCCTCCACATGCCAGATGTGCTATCAACAGCGGCGATGAAAACTTGGTTCTCCATTTGAAGCACTTGTCTCCTGCCGAAGGCCTTTGCACCAAAAGCTGAGATGGAGACATAAGATATATTATGCAGTCTCCAATTTTGTGATGCTAAATACAATAGGATGAAAGGAGTAAGGCTTGGAAGAAAGGTTGCTCTCCATGCGCTCCTATTCAATACACAACCCAATTTGATGTATATAGTGTTTTATCTTTTTACGTATGAGGTTTTCTACTACAGGCATTTGTAACTCAATACCATAACACAACAGATGCTGGATAATGGAGATGAACACAAATGTTCTTGTTTATGACCACTCTTTCAGTTGGTCTCTTGGCAGCTTCCAAGAGGGTTAGTCGTGTATAATAACTCAGGGTTTGATTACATTCTAAAAAACTGATAAGGGGCTGCAATAAATATTATACTTTATCACTTGATATTTATGGC

Coding sequences of Glyma.12g053500

Limit To All Plant Sequences

>Glyma.12g053500.1 sequence-type=CDS polypeptide=Glyma.12g053500.1.p locus=Glyma.12g053500 ID=Glyma.12g053500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGTCGGAGGATGATATGCCCGACGCCAACGACATCGAGTCCCTCGACGACGATTTCTACAGTGGCGAGACCGAGGACGCTCCCTTGGACTACTACAGCGACTACGACGCCGACGATTACTTCGACGACGCCGAGAGGATCGAGTCTCGCCGCCCTGAGCAAAATTTTACCATATTGAAGGAATCCGATATACGACTAAGACAGGAAGATGACGTCACTAGAGTAGCAACGGTTCTTTCCATATCAAGGGTTTTTGCAAGCATACTACTCCGTCACCACAATTGGAGCGTCAGTAGAGTGCACGATGCATGGTTTGCTGATGAAGAACGAGTCCGAAAAGCAGTTGGTTTGTTGGAGAAGCCAATTGTCCAGCATCCTAATACTAGAGAGCTTACTTGCGGTATCTGTTTTGAAAATTATCCTCGTGCTAGGATTGAAATGGCTTCCTGTGGGCATCCCTATTGTATCTCATGTTGGGAAGGCTATATCAGCACATCCATTAATGATGGTCCTGGATGTTTGATGTTGAGATGTCCTGATCCCACTTGTGATGCTGCTATTGGTCAAGATATGATTAATCTTCTAGTGTCGGATGAAGATAAGCAGAAATATGCACGTTACCTACTTAGATCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTACTGGAAATTATGATGTCTCTTGCCTCTGTTCATATGGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGCCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGTAAGCGACCAATTGAAAAAAATCATGGGTGCATGCACATGACATGCACTCCACCCTGTAAATTTGAATTTTGCTGGCTATGCGTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCAAAGAATTCGCTGGAGAGATACACTCATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACAGCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCACAGCTTAAGTTCATAACTGAAGCCTGGCTACAAATAATTGAGTGTAGAAGAGTGCTGAAATGGACATATGCATATGGGTTCTATTTGCCGGAGCATGAGCATGCAAAAAAGCAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGCGCAGAAAAGGAACTACAGCCATTCTTAAGTGCTGATGATTCATCTAGAGAATTCAATGACTTTCGTACAAAGCTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTAAGGGCATTAGAGAATGGTCTATCTGATGTGGGTAGTAATGGAGCTGCCTTCAGCAAAGCAACGAGCTCAAAAAATGCTGCTGGGAGCAGTAAGGGGAGATCTGGAAGAGGAAAGGGAACTTTTCGAAGCAGCACGCCCAGCAAAATGAATGATGATAGTCATTGGTGTTGCGAGCATTGTACCTATGCAAATGCCAAATCTGCCTCCACATGCCAGATGTGCTATCAACAGCGGCGATGA

>Glyma.12g053500.2 sequence-type=CDS polypeptide=Glyma.12g053500.2.p locus=Glyma.12g053500 ID=Glyma.12g053500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCCTGTGGGCATCCCTATTGTATCTCATGTTGGGAAGGCTATATCAGCACATCCATTAATGATGGTCCTGGATGTTTGATGTTGAGATGTCCTGATCCCACTTGTGATGCTGCTATTGGTCAAGATATGATTAATCTTCTAGTGTCGGATGAAGATAAGCAGAAATATGCACGTTACCTACTTAGATCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTACTGGAAATTATGATGTCTCTTGCCTCTGTTCATATGGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGCCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGTAAGCGACCAATTGAAAAAAATCATGGGTGCATGCACATGACATGCACTCCACCCTGTAAATTTGAATTTTGCTGGCTATGCGTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCAAAGAATTCGCTGGAGAGATACACTCATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACAGCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCACAGCTTAAGTTCATAACTGAAGCCTGGCTACAAATAATTGAGTGTAGAAGAGTGCTGAAATGGACATATGCATATGGGTTCTATTTGCCGGAGCATGAGCATGCAAAAAAGCAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGCGCAGAAAAGGAACTACAGCCATTCTTAAGTGCTGATGATTCATCTAGAGAATTCAATGACTTTCGTACAAAGCTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTAAGGGCATTAGAGAATGGTCTATCTGATGTGGGTAGTAATGGAGCTGCCTTCAGCAAAGCAACGAGCTCAAAAAATGCTGCTGGGAGCAGTAAGGGGAGATCTGGAAGAGGAAAGGGAACTTTTCGAAGCAGCACGCCCAGCAAAATGAATGATGATAGTCATTGGTGTTGCGAGCATTGTACCTATGCAAATGCCAAATCTGCCTCCACATGCCAGATGTGCTATCAACAGCGGCGATGA

Predicted protein sequences of Glyma.12g053500

Limit To All Plant Sequences

>Glyma.12g053500.1.p sequence-type=predicted peptide transcript=Glyma.12g053500.1 locus=Glyma.12g053500 ID=Glyma.12g053500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MESEDDMPDANDIESLDDDFYSGETEDAPLDYYSDYDADDYFDDAERIESRRPEQNFTILKESDIRLRQEDDVTRVATVLSISRVFASILLRHHNWSVSRVHDAWFADEERVRKAVGLLEKPIVQHPNTRELTCGICFENYPRARIEMASCGHPYCISCWEGYISTSINDGPGCLMLRCPDPTCDAAIGQDMINLLVSDEDKQKYARYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSTGNYDVSCLCSYGFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNHGCMHMTCTPPCKFEFCWLCVGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIEKLSDIQCQPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLSADDSSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVGSNGAAFSKATSSKNAAGSSKGRSGRGKGTFRSSTPSKMNDDSHWCCEHCTYANAKSASTCQMCYQQRR*

>Glyma.12g053500.2.p sequence-type=predicted peptide transcript=Glyma.12g053500.2 locus=Glyma.12g053500 ID=Glyma.12g053500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASCGHPYCISCWEGYISTSINDGPGCLMLRCPDPTCDAAIGQDMINLLVSDEDKQKYARYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSTGNYDVSCLCSYGFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNHGCMHMTCTPPCKFEFCWLCVGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIEKLSDIQCQPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLSADDSSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVGSNGAAFSKATSSKNAAGSSKGRSGRGKGTFRSSTPSKMNDDSHWCCEHCTYANAKSASTCQMCYQQRR*

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