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Report for Sequence Feature Glyma.12g053100

Feature Type:gene_model
Chromosome:Gm12
Start:3819324
stop:3821089
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g053100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G31450.1AT DNA glycosylase superfamily protein JGI N/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006284GO-bp base-excision repair EnsemblGenomesN/AIEA
GO:0006285GO-bp base-excision repair, AP site formation EnsemblGenomesN/AIEA
GO:0006296GO-bp nucleotide-excision repair, DNA incision, 5'-to lesion EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0042644GO-cc chloroplast nucleoid EnsemblGenomesN/AIEA
GO:0000703GO-mf oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0051539GO-mf 4 iron, 4 sulfur cluster binding EnsemblGenomesN/AIEA
PTHR10359Panther A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III JGI N/AIEA
PTHR10359:SF16Panther ENDONUCLEASE III-LIKE PROTEIN 1 JGI N/AIEA
PF00633PFAM Helix-hairpin-helix motif JGI N/AIEA
PF00730PFAM HhH-GPD superfamily base excision DNA repair protein JGI N/AIEA

Expression Patterns of Glyma.12g053100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g053100 not represented in the dataset
Glyma.12g053100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.12g053100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g05700 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g053100
>Glyma.12g053100.1 sequence-type=CDS polypeptide=Glyma.12g053100.1.p locus=Glyma.12g053100 ID=Glyma.12g053100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGGCATACACAATAAGTCATAAGAGAATAAAAAAGGACATACCTAGCTCAATTGAGCAACTACTGTTACTTCCTGGAATTGGTCCTAAGATGGCTCATTTGGTTATGAATGTTGGATGGAACAATGTTCAAGGGATATGTGTAGATACTCATGTCCACCACATTTGCAACCACCTTGGGTGGGTCTCAAGATTGGGCACTAAACAGAAAACTTCAACACCCGAAGAGACGAGGGAGGCACTGCAACGGTGGCTTCCAAAGGAAGAATGGGTTCCAATAAATCCTCTATTGGTAGGATTTGGACAACCAATTTGTACACCTCTAAGACATCGTTGTGGAGAATGCAGCATAAGTGAGTTATGCCCCTCAGCCTTGAAGGAGATCTCTTACTCAAGCCCATCTTCCAAGTCCAAAAAGTATAGAATGAACAAGAAGCTTTGA
Predicted protein sequences of Glyma.12g053100
>Glyma.12g053100.1.p sequence-type=predicted peptide transcript=Glyma.12g053100.1 locus=Glyma.12g053100 ID=Glyma.12g053100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRAYTISHKRIKKDIPSSIEQLLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHHICNHLGWVSRLGTKQKTSTPEETREALQRWLPKEEWVPINPLLVGFGQPICTPLRHRCGECSISELCPSALKEISYSSPSSKSKKYRMNKKL*






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