Glyma.12g047500

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Report for Sequence Feature Glyma.12g047500

Feature Type:	gene_model
Chromosome:	Gm12
Start:	3438359
stop:	3441799
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12g047500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G15970.1	AT	cold regulated 413 plasma membrane 1	JGI	N/A	IEA
AT3G50830.1	AT	cold-regulated 413-plasma membrane 2	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
PF05562	PFAM	Cold acclimation protein WCOR413	JGI	N/A	IEA

Proteins Associated with Glyma.12g047500

Locus	Gene Symbol	Protein Name
	COR1	cold-regulated protein

Expression Patterns of Glyma.12g047500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.12g047500

Paralog	Evidence	Comments
Glyma.11g122600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g047500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma12g05150	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.12g047500

Limit To All Plant Sequences

>Glyma.12g047500.2 sequence-type=transcript locus=Glyma.12g047500 ID=Glyma.12g047500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAGTGTTGAGAGAAAGCAAGGGCAGCTGTCATACAGTCATAGGCTAGCGCGTCTATATCTGCCTTCATTATTGGCTCCTTTTTGATTACGAAAATGTGGAAGAGAACGGGTTTTGAAGAAGAAGCAGTTCAATTGATCAACTCAGATTTCAGGGACCTAAGTCTAGCTGCTAATAGACTCGCCCATCATGCCATCAAACTTGGTGGCATTGGCTTTGGAGCCTCTTTTTTCGGATTGTTTGCTGCCATTGCTGCTATTTATCTGTTGATTTTGGATCGTACAAACTGGAAAACAAATATTCTCACAGCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAATTTTCGACGTCTTCAGGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGCCTTTTCCTTCCAAGACACTTCCCTGATTGGCTGGAATTGCCTGGTGCTCTGATTCTTCTTATCGTTGTAGCTCCTTCTCTAATTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAGGCACCACCATTTGGACTTGGTTGATATGTGAGAATTAAACCAAGTGTCTTCTGTATCATTCATTTGTTGCAACTTGATATCTATAAACACCCGGCCATTGTTTTGTGATTCATGTTTGTCCTAAGACCTAAAGTTAGCATGTGTTAAAAAGTGGAATAAAATCTCAGTTTAAGTCCTCTGGTTTCATAGAATGTAGAAAACAAAAGATGAAGAGGATTGATGTGGTGTCTTTCTAGCTGTCGTGTATTCATAAATCATGTATGATTTGGGAAATCGTTGTATTTTTACCTGTGGGATATAATATAAATTTACATTTGTTGCTGCTCTGTATTATTACATCATTTTGTTTCCAGCAAATGCATTCCTAGCAACTACAACAGAATTCCCTCTGAACATGAAAACTCAATATGCCAAATAGGTCAAGACACCAGAGGTTTTCGGAACTTGCAAAGTATAGCAACTTTAAAAGTAGTTGCAACTTATTTAGTTGGA

>Glyma.12g047500.3 sequence-type=transcript locus=Glyma.12g047500 ID=Glyma.12g047500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TACATATAGCTCTTAATGTTTGCTTTGACTTTGTTTCATAGGCTCCTTTTTGATTACGAAAATGTGGAAGAGAACGGGTTTTGAAGAAGAAGCAGTTCAATTGATCAACTCAGATTTCAGGGACCTAAGTCTAGCTGCTAATAGACTCGCCCATCATGCCATCAAACTTGGTGGCATTGGCTTTGGAGCCTCTTTTTTCGGATTGTTTGCTGCCATTGCTGCTATTTATCTGTTGATTTTGGATCGTACAAACTGGAAAACAAATATTCTCACAGCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAATTTTCGACGTCTTCAGGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGCCTTTTCCTTCCAAGACACTTCCCTGCTCCTTCTCTAATTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAGGCACCACCATTTGGACTTGGTTGATATGTGAGAATTAAACCAAGTGTCTTCTGTATCATTCATTTGTTGCAACTTGATATCTATAAACACCCGGCCATTGTTTTGTGATTCATGTTTGTCCTAAGACCTAAAGTTAGCATGTGTTAAAAAGTGGAATAAAATCTCAGTTTAAGTCCTCTGGTTTCATAGAATGTAGAAAACAAAAGATGAAGAGGATTGATGTGGTGTCTTTCTAGCTGTCGTGTATTCATAAATCATGTATGATTTGGGAAATCGTTGTATTTTTACCTGTGGGATATAATATAAATTTACATTTGTTGCTGCTCTGTATTATTACATCATTTTGTTTCCAGCAAATGCATTCCTAGCAACTACAACAGAATTCCCTCTGAACATGAAAACTCAATATGCCAAATAGGTCAAGACACCAGAGGTTTTCGGAACTTGCAAAGTATAGCAACTTTAAAAGTAGTTGCAACTTATTTAGTTGGA

>Glyma.12g047500.4 sequence-type=transcript locus=Glyma.12g047500 ID=Glyma.12g047500.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
TACATATAGCTCTTAATGTTTGCTTTGACTTTGTTTCATAGGCTCCTTTTTGATTACGAAAATGTGGAAGAGAACGGGTTTTGAAGAAGAAGCAGTTCAATTGATCAACTCAGATTTCAGGGACCTAAGTCTAGCTGCTAATAGACTCGCCCATCATGCCATCAAACTTGGTGGCATTGGCTTTGGAGCCTCTTTTTTCGGATTGTTTGCTGCCATTGCTGCTATGTATTTATCTGTTGATTTTGGATCGTACAAACTGGAAAACAAATATTCTCACAGCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAATTTTCGACGTCTTCAGGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGCCTTTTCCTTCCAAGACACTTCCCTGATTGGCTGGAATTGCCTGGTGCTCTGATTCTTCTTATCGTTGTAGCTCCTTCTCTAATTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAGGCACCACCATTTGGACTTGGTTGATATGTGAGAATTAAACCAAGTGTCTTCTGTATCATTCATTTGTTGCAACTTGATATCTATAAACACCCGGCCATTGTTTTGTGATTCATGTTTGTCCTAAGACCTAAAGTTAGCATGTGTTAAAAAGTGGAATAAAATCTCAGTTTAAGTCCTCTGGTTTCATAGAATGTAGAAAACAAAAGATGAAGAGGATTGATGTGGTGTCTTTCTAGCTGTCGTGTATTCATAAATCATGTATGATTTGGGAAATCGTTGTATTTTTACCTGTGGGATATAATATAAATTTACATTTGTTGCTGCTCTGTATTATTACATCATTTTGTTTCCAGCAAATGCATTCCTAGCAACTACAACAGAATTCCCTCTGAACATGAAAACTCAATATGCCAAATAGGTCAAGACACCAGAGGTTTTCGGAACTTGCAAAGTATAGCAACTTTAAAAGTAGTTGCAACTTATTTAGTTGGA

>Glyma.12g047500.5 sequence-type=transcript locus=Glyma.12g047500 ID=Glyma.12g047500.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
TACATATAGCTCTTAATGTTTGCTTTGACTTTGTTTCATAGGCTCCTTTTTGATTACGAAAATGTGGAAGAGAACGGGTTTTGAAGAAGAAGCAGTTCAATTGATCAACTCAGATTTCAGGGACCTAAGTCTAGCTGCTAATAGACTCGCCCATCATGCCATCAAACTTGGTGGCATTGGCTTTGGAGCCTCTTTTTTCGGATTGTTTGCTGCCATTGCTGCTATGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGCCTTTTCCTTCCAAGACACTTCCCTGATTGGCTGGAATTGCCTGGTGCTCTGATTCTTCTTATCGTTGTAGCTCCTTCTCTAATTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAGGCACCACCATTTGGACTTGGTTGATATGTGAGAATTAAACCAAGTGTCTTCTGTATCATTCATTTGTTGCAACTTGATATCTATAAACACCCGGCCATTGTTTTGTGATTCATGTTTGTCCTAAGACCTAAAGTTAGCATGTGTTAAAAAGTGGAATAAAATCTCAGTTTAAGTCCTCTGGTTTCATAGAATGTAGAAAACAAAAGATGAAGAGGATTGATGTGGTGTCTTTCTAGCTGTCGTGTATTCATAAATCATGTATGATTTGGGAAATCGTTGTATTTTTACCTGTGGGATATAATATAAATTTACATTTGTTGCTGCTCTGTATTATTACATCATTTTGTTTCCAGCAAATGCATTCCTAGCAACTACAACAGAATTCCCTCTGAACATGAAAACTCAATATGCCAAATAGGTCAAGACACCAGAGGTTTTCGGAACTTGCAAAGTATAGCAACTTTAAAAGTAGTTGCAACTTATTTAGTTGGA

Coding sequences of Glyma.12g047500

Limit To All Plant Sequences

>Glyma.12g047500.1 sequence-type=CDS polypeptide=Glyma.12g047500.1.p locus=Glyma.12g047500 ID=Glyma.12g047500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGAAGAGAACGGGTTTTGAAGAAGAAGCAGTTCAATTGATCAACTCAGATTTCAGGGACCTAAGTCTAGCTGCTAATAGACTCGCCCATCATGCCATCAAACTTGGTGGCATTGGCTTTGGAGCCTCTTTTTTCGGATTGTTTGCTGCCATTGCTGCTATTTATCTGTTGATTTTGGATCGTACAAACTGGAAAACAAATATTCTCACAGCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAATTTTCGACGTCTTCAGGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGCCTTTTCCTTCCAAGACACTTCCCTGATTGGCTGGAATTGCCTGGTGCTCTGATTCTTCTTATCGTTGTAGCTCCTTCTCTAATTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAG

>Glyma.12g047500.2 sequence-type=CDS polypeptide=Glyma.12g047500.2.p locus=Glyma.12g047500 ID=Glyma.12g047500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGAAGAGAACGGGTTTTGAAGAAGAAGCAGTTCAATTGATCAACTCAGATTTCAGGGACCTAAGTCTAGCTGCTAATAGACTCGCCCATCATGCCATCAAACTTGGTGGCATTGGCTTTGGAGCCTCTTTTTTCGGATTGTTTGCTGCCATTGCTGCTATTTATCTGTTGATTTTGGATCGTACAAACTGGAAAACAAATATTCTCACAGCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAATTTTCGACGTCTTCAGGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGCCTTTTCCTTCCAAGACACTTCCCTGATTGGCTGGAATTGCCTGGTGCTCTGATTCTTCTTATCGTTGTAGCTCCTTCTCTAATTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAG

>Glyma.12g047500.3 sequence-type=CDS polypeptide=Glyma.12g047500.3.p locus=Glyma.12g047500 ID=Glyma.12g047500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGAAGAGAACGGGTTTTGAAGAAGAAGCAGTTCAATTGATCAACTCAGATTTCAGGGACCTAAGTCTAGCTGCTAATAGACTCGCCCATCATGCCATCAAACTTGGTGGCATTGGCTTTGGAGCCTCTTTTTTCGGATTGTTTGCTGCCATTGCTGCTATTTATCTGTTGATTTTGGATCGTACAAACTGGAAAACAAATATTCTCACAGCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAATTTTCGACGTCTTCAGGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGCCTTTTCCTTCCAAGACACTTCCCTGCTCCTTCTCTAATTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAG

>Glyma.12g047500.4 sequence-type=CDS polypeptide=Glyma.12g047500.4.p locus=Glyma.12g047500 ID=Glyma.12g047500.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCATCAAACTTGGTGGCATTGGCTTTGGAGCCTCTTTTTTCGGATTGTTTGCTGCCATTGCTGCTATGTATTTATCTGTTGATTTTGGATCGTACAAACTGGAAAACAAATATTCTCACAGCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAATTTTCGACGTCTTCAGGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGCCTTTTCCTTCCAAGACACTTCCCTGATTGGCTGGAATTGCCTGGTGCTCTGATTCTTCTTATCGTTGTAGCTCCTTCTCTAATTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAG

>Glyma.12g047500.5 sequence-type=CDS polypeptide=Glyma.12g047500.5.p locus=Glyma.12g047500 ID=Glyma.12g047500.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGAAGAGAACGGGTTTTGAAGAAGAAGCAGTTCAATTGATCAACTCAGATTTCAGGGACCTAAGTCTAGCTGCTAATAGACTCGCCCATCATGCCATCAAACTTGGTGGCATTGGCTTTGGAGCCTCTTTTTTCGGATTGTTTGCTGCCATTGCTGCTATGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGCCTTTTCCTTCCAAGACACTTCCCTGATTGGCTGGAATTGCCTGGTGCTCTGATTCTTCTTATCGTTGTAGCTCCTTCTCTAATTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAG

Predicted protein sequences of Glyma.12g047500

Limit To All Plant Sequences

>Glyma.12g047500.1.p sequence-type=predicted peptide transcript=Glyma.12g047500.1 locus=Glyma.12g047500 ID=Glyma.12g047500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWKRTGFEEEAVQLINSDFRDLSLAANRLAHHAIKLGGIGFGASFFGLFAAIAAIYLLILDRTNWKTNILTALLIPYIFFSLPSLIFDVFRGELGKWIAAVAVVLRLFLPRHFPDWLELPGALILLIVVAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNSIGIILLLVYPIWALVVILF*

>Glyma.12g047500.2.p sequence-type=predicted peptide transcript=Glyma.12g047500.2 locus=Glyma.12g047500 ID=Glyma.12g047500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWKRTGFEEEAVQLINSDFRDLSLAANRLAHHAIKLGGIGFGASFFGLFAAIAAIYLLILDRTNWKTNILTALLIPYIFFSLPSLIFDVFRGELGKWIAAVAVVLRLFLPRHFPDWLELPGALILLIVVAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNSIGIILLLVYPIWALVVILF*

>Glyma.12g047500.3.p sequence-type=predicted peptide transcript=Glyma.12g047500.3 locus=Glyma.12g047500 ID=Glyma.12g047500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWKRTGFEEEAVQLINSDFRDLSLAANRLAHHAIKLGGIGFGASFFGLFAAIAAIYLLILDRTNWKTNILTALLIPYIFFSLPSLIFDVFRGELGKWIAAVAVVLRLFLPRHFPAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNSIGIILLLVYPIWALVVILF*

>Glyma.12g047500.4.p sequence-type=predicted peptide transcript=Glyma.12g047500.4 locus=Glyma.12g047500 ID=Glyma.12g047500.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPSNLVALALEPLFSDCLLPLLLCIYLLILDRTNWKTNILTALLIPYIFFSLPSLIFDVFRGELGKWIAAVAVVLRLFLPRHFPDWLELPGALILLIVVAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNSIGIILLLVYPIWALVVILF*

>Glyma.12g047500.5.p sequence-type=predicted peptide transcript=Glyma.12g047500.5 locus=Glyma.12g047500 ID=Glyma.12g047500.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWKRTGFEEEAVQLINSDFRDLSLAANRLAHHAIKLGGIGFGASFFGLFAAIAAMGELGKWIAAVAVVLRLFLPRHFPDWLELPGALILLIVVAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNSIGIILLLVYPIWALVVILF*

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