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Report for Sequence Feature Glyma.12g045800

Feature Type:gene_model
Chromosome:Gm12
Start:3323965
stop:3336181
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g045800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18860.1AT transducin family protein / WD-40 repeat family protein JGI N/AIEA
GO:0010992GO-bp ubiquitin recycling EnsemblGenomesN/AIEA
GO:0043161GO-bp proteasome-mediated ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0043130GO-mf ubiquitin binding EnsemblGenomesN/AIEA
KOG0301 KOG Phospholipase A2-activating protein (contains WD40 repeats) JGI N/AIEA
PTHR19849Panther PHOSPHOLIPASE A-2-ACTIVATING PROTEIN JGI N/AIEA
PF00400PFAM WD domain, G-beta repeat JGI N/AIEA
PF08324PFAM PUL domain JGI N/AIEA
PF09070PFAM PFU (PLAA family ubiquitin binding) JGI N/AIEA

Expression Patterns of Glyma.12g045800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g045800
ParalogEvidenceComments
Glyma.11g120700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g045800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g04990 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g045800
>Glyma.12g045800.1 sequence-type=CDS polypeptide=Glyma.12g045800.1.p locus=Glyma.12g045800 ID=Glyma.12g045800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACATTGATTTCAAAGAATACCAGTTGCGCTGCGAGCTTCGCGGCCACGAAGACGACGTTCGCGGAATATGCGTGTGCGGCAGCAAGGGTATAGCGACTTCGTCAAGGGACCGGACCGTTAGGTTGTGGTCTTTGGACGACAACCGCAGGTTCGCGAGTTCCAAGATTCTTTTGGGCCACACAAGCTTCGTGGGTCCCTTGGCATGGATTCCTCCGAATTCGGATCTCCCGCATGGTGGGGTCGTGTCTGGCGGCATGGACACACTCGTGTGTGTCTGGGACTTGAAGACTGGTGAGAAGGTTCACACTCTCAAGGGCCATCAGCTGCAGGTCACTGGCATTGCCTTTGATGATGGGGATGTTGTCTCCTCTTCTGTTGATTGTACCTTAAAACGGTGGAGGAATGGACAATCTGTAGAGTCGTGGGAGGCTCATAAGGCACCGGTCCAAACTGTCATAAAGCTGCCCTCAGGAGAGCTTGTTACAGGTTCAAGTGACACTACTTTAAAGCTTTGGAGAGGAAAAACTTGCTTGCACACCTTTCAAGGACATTCAGATACAGTTCGAGGCTTGTCTGTGATGTCTGGTCTTGGAATCCTTTCTGCATCCCATGATGGTTCTCTCAGATTATGGGCAGTAAGTGGTGAAGTGCTAATGGAGATGGTTGGTCATACTGCTATTGTTTATTCAGTTGATTCACATGCATCAGGACTTATTGTCAGTGGTAGTGAAGACCGTTTTGCCAAAGTTTGGAAAGATGGAGTTTGTGTTCAGAGCATAGAGCATCCTGGTTGCGTTTGGGATGCAAAATTTATGGAAAATGGTGATATTGTGACAGCATGTTCAGATGGAGTAGTACGCATTTGGACCATAGATCAGGATAATGTTGCTGACCAGCTAGAGCTTGAGTTATACACTTCGCAACTTTCTGAATACAAATCTAGTAGAAAGAGGGTTGGAGGATTGAAACTGGAAGAGTTACCAGGCTTGGAGGCACTGAAGATCCCAGGAACTACTGATGGCCAGACAAAAGTAGTCAGAGAGGGGGATAATGGGGTGGCATATGGATGGAACATGAAAGAACAAAAGTGGGATAAAATTGGTGAAGTAGTTGATGGACCAGAGGAATCAAATCGTCAATTTTTTGACGGTATTCAGTATGATTATGTGTTTGATGTGGATATTGGAGATGGTATGCCTACCCGTAAGTTGCCATACAATCGATCAGATAATCCATATGATGTTGCTGATAAATGGCTACTCAAGGAGAATCTTCCTCTTTCTTTTCGTGAGCAAATTGTACAGTTTATTCTTCAAAATACTGGACAAAACAATATTACTTTTGATGCTTCATTTCGTGATCCCTTCACTGGCTCCCATGCTTATGTACCAGGACAACCTTCACGCATGTCTGATATATCTGCAAAACCTACTTTCAAGCATATTCCTAAGAAAGGAATGCTTGTTTTCGATGCAGCTCAGTTTGACGGGATCCTTAAAAAGATTACTGAGTTCAATAATGCTTTACAATCTGACCAGGAAAAGCAGAACTTGTCTTTGACTGAGCTCAATGTTTCCAGACTGGGTGCCATTGTTAAAATTCTGAAAGATACTTCACATTATCATTCTAGTAAATTTGCAGACTCTGATATAGCTTTGTTACTGAATCTGCTTCGGTCGTGGCCAATCGCAATGATTTTTCCTGTCATTGATATTGTAAGGATGCTAGTTCTTCATCCTGATGGGGCTGTTTTACTTCACAAGCATTTTGAAGCAGAAAATGACATACTAATGGAAGTGATTAAGAAAGTCACTGTAAATCCAACAATCCCTGCAAATCTGTTGACCAGCATTCGTGTTGTAACTAATCTCTTCAGGAATTTGTGCTACTACAACTGGTTGCAAAAACATCGTAGTGAGATTCTTGATGCTTTCTCAAGTTGTAGTTCATCTCCAAACAAGAATTTGCAGTTGTCATACTCTACCTTGTTACTAAATTATGCGGTGCTATTAATTGAAACAAAGGATCAAGAAGGTCAATCTCAAGTTCTATCAGCAGCTCTTGAGATTGCCGAGGATGAAAATGTTGAAGTCGACCCCAAATTTCGTGCTTTAGTTGCTGTTGGATCACTGATGCTTGAAGGTCTTGTCAGAAAAACAGCACTGGATTTTGATGTTGTGAACATTGCAAAAGCAGCCAAGGGTTCTAAGGAAGCCAAGATTGCTGAAGTCGGATCTGACATTGAGCTGTTAACAAAGCAGAGCTGA
Predicted protein sequences of Glyma.12g045800
>Glyma.12g045800.1.p sequence-type=predicted peptide transcript=Glyma.12g045800.1 locus=Glyma.12g045800 ID=Glyma.12g045800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDIDFKEYQLRCELRGHEDDVRGICVCGSKGIATSSRDRTVRLWSLDDNRRFASSKILLGHTSFVGPLAWIPPNSDLPHGGVVSGGMDTLVCVWDLKTGEKVHTLKGHQLQVTGIAFDDGDVVSSSVDCTLKRWRNGQSVESWEAHKAPVQTVIKLPSGELVTGSSDTTLKLWRGKTCLHTFQGHSDTVRGLSVMSGLGILSASHDGSLRLWAVSGEVLMEMVGHTAIVYSVDSHASGLIVSGSEDRFAKVWKDGVCVQSIEHPGCVWDAKFMENGDIVTACSDGVVRIWTIDQDNVADQLELELYTSQLSEYKSSRKRVGGLKLEELPGLEALKIPGTTDGQTKVVREGDNGVAYGWNMKEQKWDKIGEVVDGPEESNRQFFDGIQYDYVFDVDIGDGMPTRKLPYNRSDNPYDVADKWLLKENLPLSFREQIVQFILQNTGQNNITFDASFRDPFTGSHAYVPGQPSRMSDISAKPTFKHIPKKGMLVFDAAQFDGILKKITEFNNALQSDQEKQNLSLTELNVSRLGAIVKILKDTSHYHSSKFADSDIALLLNLLRSWPIAMIFPVIDIVRMLVLHPDGAVLLHKHFEAENDILMEVIKKVTVNPTIPANLLTSIRVVTNLFRNLCYYNWLQKHRSEILDAFSSCSSSPNKNLQLSYSTLLLNYAVLLIETKDQEGQSQVLSAALEIAEDENVEVDPKFRALVAVGSLMLEGLVRKTALDFDVVNIAKAAKGSKEAKIAEVGSDIELLTKQS*






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