SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G25730.1 | AT | FtsJ-like methyltransferase family protein | JGI | N/A | IEA |
| GO:0000453 | GO-bp | enzyme-directed rRNA 2'-O-methylation | EnsemblGenomes | N/A | IEA |
| GO:0000463 | GO-bp | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | EnsemblGenomes | N/A | IEA |
| GO:0000466 | GO-bp | maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | EnsemblGenomes | N/A | IEA |
| GO:0001510 | GO-bp | RNA methylation | EnsemblGenomes | N/A | IEA |
| GO:0006364 | GO-bp | rRNA processing | EnsemblGenomes | N/A | IEA |
| GO:0006364 | GO-bp | rRNA processing | JGI | N/A | IEA |
| GO:0031167 | GO-bp | rRNA methylation | EnsemblGenomes | N/A | IEA |
| GO:0032259 | GO-bp | methylation | EnsemblGenomes | N/A | IEA |
| GO:0032259 | GO-bp | methylation | JGI | N/A | IEA |
| GO:0042254 | GO-bp | ribosome biogenesis | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | JGI | N/A | IEA |
| GO:0005730 | GO-cc | nucleolus | EnsemblGenomes | N/A | IEA |
| GO:0030687 | GO-cc | preribosome, large subunit precursor | EnsemblGenomes | N/A | IEA |
| GO:0008168 | GO-mf | methyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008168 | GO-mf | methyltransferase activity | JGI | N/A | IEA |
| GO:0008649 | GO-mf | rRNA methyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008650 | GO-mf | rRNA (uridine-2'-O-)-methyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016435 | GO-mf | rRNA (guanine) methyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| KOG1098 | KOG | Putative SAM-dependent rRNA methyltransferase SPB1 | JGI | N/A | IEA |
| PTHR10920 | Panther | RIBOSOMAL RNA METHYLTRANSFERASE | JGI | N/A | IEA |
| PTHR10920:SF13 | Panther | PRE-RRNA PROCESSING PROTEIN FTSJ3 | JGI | N/A | IEA |
| PF01728 | PFAM | FtsJ-like methyltransferase | JGI | N/A | IEA |
| PF07780 | PFAM | Spb1 C-terminal domain | JGI | N/A | IEA |
| PF11861 | PFAM | Domain of unknown function (DUF3381) | JGI | N/A | IEA |
|
Glyma.12g042600 not represented in the dataset |
Glyma.12g042600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.11g116800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma12g04650 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.12g042600.1 sequence-type=CDS polypeptide=Glyma.12g042600.1.p locus=Glyma.12g042600 ID=Glyma.12g042600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGGAAGGCGAAGGGGAAGCACCGTTTGGACAAGTATTACCACTTAGCGAAAGAGCACGGTTACAGGTCTCGAGCCTCATGGAAGCTGGTCCAGCTCAACTCCAAGTTCGGCTTCCTGGAATCGGCCCGCGCCGTGCTGGACCTCTGCGCCGCCCCCGGAGGGTGGATGCAGGTGGTGGTCCAGCGCGTACCCGTGGACCACCTGGTGATCGGCGTGGACCTCGCCCCCATCGCCCCCGTCCGTGGCGCCATCGCCATCCAGGAAGACATCACCAGGCCCGAGTGCAAGTCCCGCATCAAGAAGCTCATGAACGACCACGGCTGCCGCGCCTTCGACGTCATCTTGCACGACGGTTCCCCCAACGTCGGTGGCGCCTGGGCCCAGGAAGCTATGAGCCAGAACGCCCTCGTTATTGATGCTGTCAAGTTGGCCACTCAGTTCTTAGCCCCCAAGGGCAAGTTTGTAACCAAAATTTTCAGGTCGCAAGATTACAGTTCTGTGGTGTATTGTTTGAAGCAGTTGTTTGAGAAGGTTGAGGTGGATAAGCCTGCGGCTAGTCGTTCTGAATCAGCTGAGATATATGTTTTGGGGCTTGGGTATAAGGCCCCTGCTAAGATTGATCCACGGCTTCTTGATGTGAAGCATCTCTTTCAGGGATCTGTGGAACCACAGCCTAAGGTGGTGGATGTACTTCGAGATACTAAGCAAAAAAGGCACCGTGATGGCTATGAAGATGGAAACACAACTTTGAGGAAGGTGTCTTCAGCTGCAAATTTCATTTGGTCAAATTCTCCTCTGGAGATCCTTGGTTCAGTCACTTCCATAACCTTTACTGATCCAGCTGATTCACTGATCAAGGATCATGACCTAACTAGTGAAGAGGTAAAATCTCTCTGCGATGATTTAAGGGTTCTGGGGAAGCAAGACTTCAAGCATCTTCTAAAGTGGAGGATTCAAGTTAGAAAAGCTCTTTCACCAACTCAAAAGCCTGATTCTACCACTACAGAACTGATGGACAATGAGCCTAAGGTGGTGGATGAAGAAGATAGAATACTCAATGAAATGGAGGAACTGACTTATGTAATGGACCGCAAGAAGAAACGTGCAAAGAAGCTTCTTGCAAAAAGAAGAGCCAAGGACAAGGCACGAAAAGCAACAGGGATGCAAATGGATGCAATAGATGATGGTTATGTAGATCAAGAGTTGTTTGCACTTTCCTCTATTAAGGGTAAGAAGGATCTGGTAGCTGTTGACAACACTGAGTATGAAGGTGATGAAGGAGAAGTAGAAGACAGTGAGAATGAAGAAACCCATGAAGGCCGCCCAGAGCATTCATCCAGTGACTTGGAAGATTCTGATGAGGAACGTAAAAGATACAATGAACAAATGGAAGATTTGATGGATCAAGCTTACGAGAGGTTTGTGATCAGAAAGGAAGGAAGTGCAAAACAGAGGAAGCGAATTAAAAAATCCTATGATGCAAAGGCCCAACTTTTGGAGGGTGGTGAGGATGATGATATTGTTCAATCCAAGTATGATTCAGATGAAGATCAGGGTGATCAAGAAGCAAATCCATTGATGGTGCCACTTAATGATGAGGCAGAGCTCACCCAGGAGGAGATCATGAATAAGTGGTTTAGTCAGGATGTCTTTGCTGAAGCTGCAGAGGAAGGAGACTTTAAGAAGGATGAGAGTAAAGATGAAATGGATATAGATGAGCCTAAGGAGAAGATATCCATTGCCAAAAAGGTAAAAGAAAATAAAACAGCAGCCCCAGCTGTAGCAACTCACCCTCAGCCTCAACCATCCAAGGCAGGGGATGATTTTGAAATAGTTCCTGCACCCGATACTGATTCAAGTGATGATTCATCCTCTGATGAATGGGAAGAAGATATTGAAGCCAAAGCTGAGATATTGGCTTATGCTAAGAAGATGATGAGGAAAAAGCAACGGGAGCACTTACTGGATGATGCATACAACAAGTACATGTTTGATGACGAAGGATTGCCCAAGTGGTTTCTAGATGAGGAGAGGAGACATCGCCAACCAATAAAGCCTATTACCAAAGAGGAAATTGCTGCGATGAAAGCACAGTTTAAAGAAATTGATGCTCGACCTGCGAAGAAGGTGGCAGAGGCCAAAGCACGGAAGAAGCGTGTTGCAATGAGGAAACTTGAGAAGGTACGGAAGAAGGCCAATGCCATATCAGATCAGACAGAGATATCTGATCGTTCGAAGAGGAAGCAAATTGAACAACTATATAAAAGGGCTGTTCCTAAGAGGCCTAAAAAGGAATATGTAGTGGCAAAGAAAGGTGTCCAGGTAAGGGCTGGCAAGGGAAAAGTCCTTGTTGATCGCAGAATGAAGAAGGATGCTAGGAAACATGGATCGGGTAAGGGTGGAAAAGGAGGTTCTAAGACGAAGGGCAAGGCTCCAAAGGGCAAAGGAGGATCTTCAAAGGCCTCTGCCTCTGCAAAAAAAGGGAAACAGAGAACTAAATGA
>Glyma.12g042600.1.p sequence-type=predicted peptide transcript=Glyma.12g042600.1 locus=Glyma.12g042600 ID=Glyma.12g042600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGKAKGKHRLDKYYHLAKEHGYRSRASWKLVQLNSKFGFLESARAVLDLCAAPGGWMQVVVQRVPVDHLVIGVDLAPIAPVRGAIAIQEDITRPECKSRIKKLMNDHGCRAFDVILHDGSPNVGGAWAQEAMSQNALVIDAVKLATQFLAPKGKFVTKIFRSQDYSSVVYCLKQLFEKVEVDKPAASRSESAEIYVLGLGYKAPAKIDPRLLDVKHLFQGSVEPQPKVVDVLRDTKQKRHRDGYEDGNTTLRKVSSAANFIWSNSPLEILGSVTSITFTDPADSLIKDHDLTSEEVKSLCDDLRVLGKQDFKHLLKWRIQVRKALSPTQKPDSTTTELMDNEPKVVDEEDRILNEMEELTYVMDRKKKRAKKLLAKRRAKDKARKATGMQMDAIDDGYVDQELFALSSIKGKKDLVAVDNTEYEGDEGEVEDSENEETHEGRPEHSSSDLEDSDEERKRYNEQMEDLMDQAYERFVIRKEGSAKQRKRIKKSYDAKAQLLEGGEDDDIVQSKYDSDEDQGDQEANPLMVPLNDEAELTQEEIMNKWFSQDVFAEAAEEGDFKKDESKDEMDIDEPKEKISIAKKVKENKTAAPAVATHPQPQPSKAGDDFEIVPAPDTDSSDDSSSDEWEEDIEAKAEILAYAKKMMRKKQREHLLDDAYNKYMFDDEGLPKWFLDEERRHRQPIKPITKEEIAAMKAQFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKKANAISDQTEISDRSKRKQIEQLYKRAVPKRPKKEYVVAKKGVQVRAGKGKVLVDRRMKKDARKHGSGKGGKGGSKTKGKAPKGKGGSSKASASAKKGKQRTK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
