Glyma.12g040200

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Report for Sequence Feature Glyma.12g040200

Feature Type:	gene_model
Chromosome:	Gm12
Start:	2893314
stop:	2898275
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12g040200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G05060.1	AT	NOP56-like pre RNA processing ribonucleoprotein	JGI	N/A	IEA
GO:0000154	GO-bp	rRNA modification	EnsemblGenomes	N/A	IEA
GO:0031428	GO-cc	box C/D snoRNP complex	EnsemblGenomes	N/A	IEA
GO:0032040	GO-cc	small-subunit processome	EnsemblGenomes	N/A	IEA
GO:0030515	GO-mf	snoRNA binding	EnsemblGenomes	N/A	IEA
KOG2572	KOG	Ribosome biogenesis protein - Nop58p/Nop5p	JGI	N/A	IEA
PTHR10894	Panther	NUCLEOLAR PROTEIN 5 (NUCLEOLAR PROTEIN NOP5)(NOP58)	JGI	N/A	IEA
PF01798	PFAM	Putative snoRNA binding domain	JGI	N/A	IEA
PF08060	PFAM	NOSIC (NUC001) domain	JGI	N/A	IEA
PF08156	PFAM	NOP5NT (NUC127) domain	JGI	N/A	IEA

Expression Patterns of Glyma.12g040200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g040200 not represented in the dataset	Glyma.12g040200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.12g040200

Paralog	Evidence	Comments
Glyma.11g114300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g040200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma12g04400	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.12g040200

Limit To All Plant Sequences

>Glyma.12g040200.2 sequence-type=transcript locus=Glyma.12g040200 ID=Glyma.12g040200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTGCCTCAAACAAAATAGTTTCGCTGCCGCCTCTTCTTCGAGTTGTAACCTCTCTCTTCAACCCTAACTTAGGGTTTATGTTCTAAAACCCTTTTCAGGTTGATTGGAGGAGATAAAAATGCTCGTGTTGTTTGAAACCCCTGCGGGTTTTGCCCTGTTTAAAGTGCTGGATGAAGGCAAGCTTTCTAAAGTTGAGGACTTGTGGAAGAACTTTTCCAGTGCAGATACTGCTAGACAGGTGGTCAAGTTGAAAGCATTTTCTAAATTTGAGAACACTTCAGAAGCTCTAGAGGCAGCTACTTTACTTATTGATGGAAAAGCTAGCAAGGGTCTGCGCAAGTTCCTGCGTGTTCATTGTGAAAATGAAACACTAGGTGTGGCAGATTCAAAGCTTGGGAATGTGATCAAGGAGAAATTGAAAATTGACTGTATTCACAACAATGCAGTTATGGAGTTGATGAGAGGCGTTAGAAATCAGTTAACTGAACTTATATCTGGTCTAGCTGTTCAAGACATGGCCCCAATGAGCTTGGGTTTATCTCACAGCTTATCCAGATACAAATTGAAGTTTAGTGCAGAGAAGGTGGATACCATGATTGTCCAGGCTATTGGTTTACTAGATGATCTTGATAAAGAGTTGAATACCTATGCCATGAGGGTTCGAGAATGGTATGGTTGGCATTTTCCCGAGCTTACTAAAATAATACAGGACAACATCCTATATGCCAGGGCAGTCAAGTTGATGGGTGATCGTGTTAATGCAGCTAACCTGGATTTCTCTGAGATTTTGCCAGAGGAAGTTGAGGCAGAGCTGAAGGAGGCATCTGTAATATCTATGGGAACTGAAATTGGTGAGCTTGATTTGGCAAATATTAGAGAACTCTGTGACCAGGTTTTGTCTCTCTCGGAATACAGGGCACAACTCTATGATTATTTGAAGAGTAGAATGAACACCATTGCACCCAATTTGACTGCAATGGTTGGGGAGCTTGTTGGTGCTCGCCTCATTGCCCATGGTGGTAGCTTATTAAATCTTGCAAAGCAGCCTGGCAGTACTGTGCAAATTCTTGGTGCTGAGAAGGCTCTCTTTAGGGCACTAAAGACTAAGCATGCTACTCCCAAGTATGGTCTTATATACCATGCTTCCTTGATTGGTCAGGCAGCTCCAAAGTTCAAGGGGAAAATTTCCCGGTCACTTGCAGCAAAGACGGCATTGGCTATTAGGTGTGATGCTCTTGGAGATAGCCAAGATAACACCATGGGATTGGAGAACAGAGCCAAGGTACTTGTTATATCTTGTATGGTTATATTGCTTTTTTCTTTCAGACTTTTAACAAGTTTTAGTTGCAGCTTGAAGCACGATTGAGGAACCTTGAAGGCAAAGAGTTAGGTCGTTTTGCTGGTTCTGCCAAGGGAAAGCCCAAGATAGAAGCATACGACAAGGACCGAAAGAAAGGAGCTGGAGGACTGATAACCCCGGCCAAGACATATAATCCTTCAGCTGATTCAGTTATTGGGCAAATGGTCAATTCTGCTATGGATGAAGATGCACAAGAGCCTTCTGTTGCTGATaaaaagaaagaaaagaaagaaaagaaggaaaagaagaaaaaggagaaaaatgaaggggatgaaactgtgcaagctgatggtgacgttggtgaggaaccagaaccagaagttgtgaaaaaggaaaagaagaagaaaaggaagGAAACTGAGAGTGCTGAGTTGCAGAATGGGAATGACGATAATGCAGGAGAAAAGAAGAAAAAGAGAAAGAAGCATGCCGAGAAGGAAGAATCTCCTGAAATGCCAAGCAAGAAGAAAGGCAAAAAAAAGAAAAGTGGGGACTAAGGTGAAGTCATCTGCTAATCAATCTGGTGAATGACAACCATTTTTGTATACTCCGGGCAGCTCAGTAGTTTGTTTGGTATAATTTTTGTTTTCATTTTTATGCAATTTGTAGCTTTATACATCCTTTATTATTATTTAATGGGCTTGAGTGGATAATTTGATGCAATCATGTTTATGAATGGAAGATGGTGGTGCGCTACCCTTTGTAATGCTATTTTTTTACGCTTCTTTTCTGATTCACCTTCGCATAAGTAACGTGAGTTTA

Coding sequences of Glyma.12g040200

Limit To All Plant Sequences

>Glyma.12g040200.1 sequence-type=CDS polypeptide=Glyma.12g040200.1.p locus=Glyma.12g040200 ID=Glyma.12g040200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTCGTGTTGTTTGAAACCCCTGCGGGTTTTGCCCTGTTTAAAGTGCTGGATGAAGGCAAGCTTTCTAAAGTTGAGGACTTGTGGAAGAACTTTTCCAGTGCAGATACTGCTAGACAGGTGGTCAAGTTGAAAGCATTTTCTAAATTTGAGAACACTTCAGAAGCTCTAGAGGCAGCTACTTTACTTATTGATGGAAAAGCTAGCAAGGGTCTGCGCAAGTTCCTGCGTGTTCATTGTGAAAATGAAACACTAGGTGTGGCAGATTCAAAGCTTGGGAATGTGATCAAGGAGAAATTGAAAATTGACTGTATTCACAACAATGCAGTTATGGAGTTGATGAGAGGCGTTAGAAATCAGTTAACTGAACTTATATCTGGTCTAGCTGTTCAAGACATGGCCCCAATGAGCTTGGGTTTATCTCACAGCTTATCCAGATACAAATTGAAGTTTAGTGCAGAGAAGGTGGATACCATGATTGTCCAGGCTATTGGTTTACTAGATGATCTTGATAAAGAGTTGAATACCTATGCCATGAGGGTTCGAGAATGGTATGGTTGGCATTTTCCCGAGCTTACTAAAATAATACAGGACAACATCCTATATGCCAGGGCAGTCAAGTTGATGGGTGATCGTGTTAATGCAGCTAACCTGGATTTCTCTGAGATTTTGCCAGAGGAAGTTGAGGCAGAGCTGAAGGAGGCATCTGTAATATCTATGGGAACTGAAATTGGTGAGCTTGATTTGGCAAATATTAGAGAACTCTGTGACCAGGTTTTGTCTCTCTCGGAATACAGGGCACAACTCTATGATTATTTGAAGAGTAGAATGAACACCATTGCACCCAATTTGACTGCAATGGTTGGGGAGCTTGTTGGTGCTCGCCTCATTGCCCATGGTGGTAGCTTATTAAATCTTGCAAAGCAGCCTGGCAGTACTGTGCAAATTCTTGGTGCTGAGAAGGCTCTCTTTAGGGCACTAAAGACTAAGCATGCTACTCCCAAGTATGGTCTTATATACCATGCTTCCTTGATTGGTCAGGCAGCTCCAAAGTTCAAGGGGAAAATTTCCCGGTCACTTGCAGCAAAGACGGCATTGGCTATTAGGTGTGATGCTCTTGGAGATAGCCAAGATAACACCATGGGATTGGAGAACAGAGCCAAGCTTGAAGCACGATTGAGGAACCTTGAAGGCAAAGAGTTAGGTCGTTTTGCTGGTTCTGCCAAGGGAAAGCCCAAGATAGAAGCATACGACAAGGACCGAAAGAAAGGAGCTGGAGGACTGATAACCCCGGCCAAGACATATAATCCTTCAGCTGATTCAGTTATTGGGCAAATGGTCAATTCTGCTATGGATGAAGATGCACAAGAGCCTTCTGTTGCTGATAAAAAGAAAGAAAAGAAAGAAAAGAAGGAAAAGAAGAAAAAGGAGAAAAATGAAGGGGATGAAACTGTGCAAGCTGATGGTGACGTTGGTGAGGAACCAGAACCAGAAGTTGTGAAAAAGGAAAAGAAGAAGAAAAGGAAGGAAACTGAGAGTGCTGAGTTGCAGAATGGGAATGACGATAATGCAGGAGAAAAGAAGAAAAAGAGAAAGAAGCATGCCGAGAAGGAAGAATCTCCTGAAATGCCAAGCAAGAAGAAAGGCAAAAAAAAGAAAAGTGGGGACTAA

>Glyma.12g040200.2 sequence-type=CDS polypeptide=Glyma.12g040200.2.p locus=Glyma.12g040200 ID=Glyma.12g040200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTCGTGTTGTTTGAAACCCCTGCGGGTTTTGCCCTGTTTAAAGTGCTGGATGAAGGCAAGCTTTCTAAAGTTGAGGACTTGTGGAAGAACTTTTCCAGTGCAGATACTGCTAGACAGGTGGTCAAGTTGAAAGCATTTTCTAAATTTGAGAACACTTCAGAAGCTCTAGAGGCAGCTACTTTACTTATTGATGGAAAAGCTAGCAAGGGTCTGCGCAAGTTCCTGCGTGTTCATTGTGAAAATGAAACACTAGGTGTGGCAGATTCAAAGCTTGGGAATGTGATCAAGGAGAAATTGAAAATTGACTGTATTCACAACAATGCAGTTATGGAGTTGATGAGAGGCGTTAGAAATCAGTTAACTGAACTTATATCTGGTCTAGCTGTTCAAGACATGGCCCCAATGAGCTTGGGTTTATCTCACAGCTTATCCAGATACAAATTGAAGTTTAGTGCAGAGAAGGTGGATACCATGATTGTCCAGGCTATTGGTTTACTAGATGATCTTGATAAAGAGTTGAATACCTATGCCATGAGGGTTCGAGAATGGTATGGTTGGCATTTTCCCGAGCTTACTAAAATAATACAGGACAACATCCTATATGCCAGGGCAGTCAAGTTGATGGGTGATCGTGTTAATGCAGCTAACCTGGATTTCTCTGAGATTTTGCCAGAGGAAGTTGAGGCAGAGCTGAAGGAGGCATCTGTAATATCTATGGGAACTGAAATTGGTGAGCTTGATTTGGCAAATATTAGAGAACTCTGTGACCAGGTTTTGTCTCTCTCGGAATACAGGGCACAACTCTATGATTATTTGAAGAGTAGAATGAACACCATTGCACCCAATTTGACTGCAATGGTTGGGGAGCTTGTTGGTGCTCGCCTCATTGCCCATGGTGGTAGCTTATTAAATCTTGCAAAGCAGCCTGGCAGTACTGTGCAAATTCTTGGTGCTGAGAAGGCTCTCTTTAGGGCACTAAAGACTAAGCATGCTACTCCCAAGTATGGTCTTATATACCATGCTTCCTTGATTGGTCAGGCAGCTCCAAAGTTCAAGGGGAAAATTTCCCGGTCACTTGCAGCAAAGACGGCATTGGCTATTAGGTGTGATGCTCTTGGAGATAGCCAAGATAACACCATGGGATTGGAGAACAGAGCCAAGGTACTTGTTATATCTTGTATGGTTATATTGCTTTTTTCTTTCAGACTTTTAACAAGTTTTAGTTGCAGCTTGAAGCACGATTGA

Predicted protein sequences of Glyma.12g040200

Limit To All Plant Sequences

>Glyma.12g040200.1.p sequence-type=predicted peptide transcript=Glyma.12g040200.1 locus=Glyma.12g040200 ID=Glyma.12g040200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLVLFETPAGFALFKVLDEGKLSKVEDLWKNFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRVHCENETLGVADSKLGNVIKEKLKIDCIHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSAEKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNILYARAVKLMGDRVNAANLDFSEILPEEVEAELKEASVISMGTEIGELDLANIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKFKGKISRSLAAKTALAIRCDALGDSQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNPSADSVIGQMVNSAMDEDAQEPSVADKKKEKKEKKEKKKKEKNEGDETVQADGDVGEEPEPEVVKKEKKKKRKETESAELQNGNDDNAGEKKKKRKKHAEKEESPEMPSKKKGKKKKSGD*

>Glyma.12g040200.2.p sequence-type=predicted peptide transcript=Glyma.12g040200.2 locus=Glyma.12g040200 ID=Glyma.12g040200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLVLFETPAGFALFKVLDEGKLSKVEDLWKNFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRVHCENETLGVADSKLGNVIKEKLKIDCIHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSAEKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNILYARAVKLMGDRVNAANLDFSEILPEEVEAELKEASVISMGTEIGELDLANIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKFKGKISRSLAAKTALAIRCDALGDSQDNTMGLENRAKVLVISCMVILLFSFRLLTSFSCSLKHD*

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