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Report for Sequence Feature Glyma.12g032400

Feature Type:gene_model
Chromosome:Gm12
Start:2428731
stop:2440084
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G20080.1AT Calcium-dependent lipid-binding (CaLB domain) family protein JGI N/AIEA
GO:0006869GO-bp lipid transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008289GO-mf lipid binding EnsemblGenomesN/AIEA
PTHR10774Panther EXTENDED SYNAPTOTAGMIN-RELATED JGI N/AIEA
PTHR10774:SF2Panther JGI N/AIEA
PF00168PFAM C2 domain JGI N/AIEA

LocusGene SymbolProtein Name
C2-122 C2 domain containing protein gene 122

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.11g107300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma12g03620 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.12g032400.2 sequence-type=transcript locus=Glyma.12g032400 ID=Glyma.12g032400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTATGGATGCCTTGCTTTCTGCATCCGTCTCTCGCCGTTCAATTGGTTCGCCTTTCTGCCCCCACCTCTACTATAAGGACAAAAACTCTTAAACGATCTTTTCCTCACTTTTTTCTTCTTCTTTAAAATAATTGATCTCTTGAAAAAATAAAAATAAAAATAAAATTACACTGAACTGAGTAGAGGAATGGTGTAGTAGTGGAGAGAAATCGCGATCTGGAATAGGGTTTAGCTGAAAGATCGAGTTGAAATGGGTTTCTTTGGTACCATTTTGGGGTTTTTGGGATTTGGGGTTGGGATTTCGATTGGTCTCGTGTCTGGGTACTTTCTCTTCATCTACTTCCAACCCACCAATGTTGAGGATCCTGAAATCAAGCCATTGTCGGAGCAAGAGCAAGAGACTCTGCAACGAATGTTTCCAGAGATTCCTCTTTGGATAAAAAATCCGGATTTTGATCGGGGATGAAAGTTTTTGTGACTGATGAGAAGGAGTTAATTATGGAGCCTTCTGTAAAATGGGCTGGAAATCCTAATGTCACTGTTTCTGTTAAGGCATTTGGGTTGAAAGCAACTGTGCAGGTTGTGGATTTACAAGTTTTCCTCTTGCCTCGCATTACTTTGAAGCCTTTGGTTCCTAGCTTTCCGTGCTTTGCCAACATATACGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTCATAGGGGCTGATCTTATGTCTATTCCGGGAGTCTACAGGATTGTTCAGGAGCTTATCAAAGATCAGGTTGCAAACATGTATCTATGGCCCAAAACCTTGGAAGTTCAAGTGTTAGATATGTCAAAAGCCTTGAAGAGGCCTGTTGGAATTTTACATGTAAAGGTTCTGCAAGCAATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTAAAGCTTACTGAGGATAAATTGCCATCAAAAAAGACTACTGTGAAGCACAATAACTTAAATCCTGAATGGAATGAAGAATTCAATATAGTTGTTAAAGATCCAGACTCCCAGGTTTTAGAGATTAATGTTTATGACTGGGAGCAGGTTGGGAAGCGTGACAAGATGGGTATGAATGTGATCCCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTTTTACTCTTGACCTCCTAAAAAATATGGATCCTAATGATGCCCAAAATGAGAAGTCACGAGGGCAGATTGTTGTAGAATTGACATATAAACCCTTCAAGGAGGAGGATTTGGGCAAGGGGTTTGAAGAGACACAGACAGTACCAAAAGCTCCTGAAGGTACTCCAGCTGGTGGAGGTTTGCTTGTAGTTATAGTCCATGAAGCTCAAGACGTTGAAGGAAAGTATCACACTAATCCACATGTACGCCTTATTTTCAGAGGGGATGAGAAAAAAACCAAGCGCATTAAAAAGAACAGAGATCCAAGATGGGAAGATGAGTTCCAGTTTATGGTGGACGAGCCTCCCACCAATGATAGATTACATGTGGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCACCAAAAGGAATCATTGGGTTATATCGACATCAATCTTGGGGATGTTGTTGCCAACAAAAGAATCAATGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCCTCCAGATAGAGTTGCAGTGGAGAACCTCGGAAGCATGATGATTAAATTCTCCATAGATTTGTACTTCTGTTTCCTTTCTCCCCGTCTTTCCTTTTTTAAAGATTGTTTTCTATGCAGTGCAAGGAAAATGTGAGAAAAGGGTATTTCTTGTGCTCTTGTGAAATATATTGATTTTATTTGTCAATCATGTACATGTTTGAGATAAAAAGGTCTGAAATAGCAAAAGCATAGATATGATTTGGTTTTGATTATATACATTTACCTTACTTGGTATCATTATAGACGACCTATATGATACGTATGCAGCTTTCAGCTTGA

>Glyma.12g032400.3 sequence-type=transcript locus=Glyma.12g032400 ID=Glyma.12g032400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAATCTAGGTCCATAAATATCGCTGTTTTAAGACATTGCCTGTGATACCAAAGATAATGCCTTTTTGGGATATGAAACAGAGTTAGAGAAAGAGTAACCAGTATTTACACACGAAATCTTCTTATATGGCTTGTTGGTCTTGAATCAATATTTTCTATTAAATTCAAGGTTTGAAATTTTGATAGTACTTTCCTTGAACTTGAACTAACAAGTTGGAGGCCAGTTTCTGGTTAGAACTTGAAGAAAAGTTGATGTATTATATAATGCATTTCCCCATAAGATCCCCTGTTGCATTTTACTTGTTATGTATGAGTCAGTTGTTATAGTCTTAAAGATTACCCTTTCATGTCTTCATCTTTACAATAAAGGATTATTTGACTTGTTTCTTTGCTATTCTACGATATAATTGATTTATGTCATGATAACTTATTTGTTATGTCATATAATATGAACTTTCTTAACACTTTTGTTAAATTCACATTCATAGGGATGAAAGTTTTTGTGACTGATGAGAAGGAGTTAATTATGGAGCCTTCTGTAAAATGGGCTGGAAATCCTAATGTCACTGTTTCTGTTAAGGCATTTGGGTTGAAAGCAACTGTGCAGGTTGTGGATTTACAAGTTTTCCTCTTGCCTCGCATTACTTTGAAGCCTTTGGTTCCTAGCTTTCCGTGCTTTGCCAACATATACGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTCATAGGGGCTGATCTTATGTCTATTCCGGGAGTCTACAGGATTGTTCAGGAGCTTATCAAAGATCAGGTTGCAAACATGTATCTATGGCCCAAAACCTTGGAAGTTCAAGTGTTAGATATGTCAAAAGCCTTGAAGAGGCCTGTTGGAATTTTACATGTAAAGGTTCTGCAAGCAATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTAAAGCTTACTGAGGATAAATTGCCATCAAAAAAGACTACTGTGAAGCACAATAACTTAAATCCTGAATGGAATGAAGAATTCAATATAGTTGTTAAAGATCCAGACTCCCAGGTTTTAGAGATTAATGTTTATGACTGGGAGCAGGTTGGGAAGCGTGACAAGATGGGTATGAATGTGATCCCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTTTTACTCTTGACCTCCTAAAAAATATGGATCCTAATGATGCCCAAAATGAGAAGTCACGAGGGCAGATTGTTGTAGAATTGACATATAAACCCTTCAAGGAGGAGGATTTGGGCAAGGGGTTTGAAGAGACACAGACAGTACCAAAAGCTCCTGAAGGTACTCCAGCTGGTGGAGGTTTGCTTGTAGTTATAGTCCATGAAGCTCAAGACGTTGAAGGAAAGTATCACACTAATCCACATGTACGCCTTATTTTCAGAGGGGATGAGAAAAAAACCAAGCGCATTAAAAAGAACAGAGATCCAAGATGGGAAGATGAGTTCCAGTTTATGGTGGACGAGCCTCCCACCAATGATAGATTACATGTGGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCACCAAAAGGAATCATTGGGTTATATCGACATCAATCTTGGGGATGTTGTTGCCAACAAAAGAATCAATGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCCTCCAGATAGAGTTGCAGTGGAGAACCTCGGAAGCATGATGATTAAATTCTCCATAGATTTGTACTTCTGTTTCCTTTCTCCCCGTCTTTCCTTTTTTAAAGATTGTTTTCTATGCAGTGCAAGGAAAATGTGAGAAAAGGGTATTTCTTGTGCTCTTGTGAAATATATTGATTTTATTTGTCAATCATGTACATGTTTGAGATAAAAAGGTCTGAAATAGCAAAAGCATAGATATGATTTGGTTTTGATTATATACATTTACCTTACTTGGTATCATTATAGACGACCTATATGATACGTATGCAGCTTTCAGCTTGA

>Glyma.12g032400.1 sequence-type=CDS polypeptide=Glyma.12g032400.1.p locus=Glyma.12g032400 ID=Glyma.12g032400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTTCTTTGGTACCATTTTGGGGTTTTTGGGATTTGGGGTTGGGATTTCGATTGGTCTCGTGTCTGGGTACTTTCTCTTCATCTACTTCCAACCCACCAATGTTGAGGATCCTGAAATCAAGCCATTGTCGGAGCAAGAGCAAGAGACTCTGCAACGAATGTTTCCAGAGATTCCTCTTTGGATAAAAAATCCGGATTTTGATCGGCTTGATTGGCTGAACAAGTTTGTAGAATATATGTGGCCGTATCTTGATAAGGCAATTTGTAAGACTGCGAAAAACATTGCAAAACCCATAATTGCCGAACAGATTCCTAAATACAAAATTGATTCTGTTGAGTTTGAAACACTCACATTGGGGTCGCTGCCACCAACATTTCAAGGGATGAAAGTTTTTGTGACTGATGAGAAGGAGTTAATTATGGAGCCTTCTGTAAAATGGGCTGGAAATCCTAATGTCACTGTTTCTGTTAAGGCATTTGGGTTGAAAGCAACTGTGCAGGTTGTGGATTTACAAGTTTTCCTCTTGCCTCGCATTACTTTGAAGCCTTTGGTTCCTAGCTTTCCGTGCTTTGCCAACATATACGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTCATAGGGGCTGATCTTATGTCTATTCCGGGAGTCTACAGGATTGTTCAGGAGCTTATCAAAGATCAGGTTGCAAACATGTATCTATGGCCCAAAACCTTGGAAGTTCAAGTGTTAGATATGTCAAAAGCCTTGAAGAGGCCTGTTGGAATTTTACATGTAAAGGTTCTGCAAGCAATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTAAAGCTTACTGAGGATAAATTGCCATCAAAAAAGACTACTGTGAAGCACAATAACTTAAATCCTGAATGGAATGAAGAATTCAATATAGTTGTTAAAGATCCAGACTCCCAGGTTTTAGAGATTAATGTTTATGACTGGGAGCAGGTTGGGAAGCGTGACAAGATGGGTATGAATGTGATCCCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTTTTACTCTTGACCTCCTAAAAAATATGGATCCTAATGATGCCCAAAATGAGAAGTCACGAGGGCAGATTGTTGTAGAATTGACATATAAACCCTTCAAGGAGGAGGATTTGGGCAAGGGGTTTGAAGAGACACAGACAGTACCAAAAGCTCCTGAAGGTACTCCAGCTGGTGGAGGTTTGCTTGTAGTTATAGTCCATGAAGCTCAAGACGTTGAAGGAAAGTATCACACTAATCCACATGTACGCCTTATTTTCAGAGGGGATGAGAAAAAAACCAAGCGCATTAAAAAGAACAGAGATCCAAGATGGGAAGATGAGTTCCAGTTTATGGTGGACGAGCCTCCCACCAATGATAGATTACATGTGGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCACCAAAAGGAATCATTGGGTTATATCGACATCAATCTTGGGGATGTTGTTGCCAACAAAAGAATCAATGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCCTCCAGATAGAGTTGCAGTGGAGAACCTCGGAAGCATGA

>Glyma.12g032400.2 sequence-type=CDS polypeptide=Glyma.12g032400.2.p locus=Glyma.12g032400 ID=Glyma.12g032400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAGTTTTTGTGACTGATGAGAAGGAGTTAATTATGGAGCCTTCTGTAAAATGGGCTGGAAATCCTAATGTCACTGTTTCTGTTAAGGCATTTGGGTTGAAAGCAACTGTGCAGGTTGTGGATTTACAAGTTTTCCTCTTGCCTCGCATTACTTTGAAGCCTTTGGTTCCTAGCTTTCCGTGCTTTGCCAACATATACGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTCATAGGGGCTGATCTTATGTCTATTCCGGGAGTCTACAGGATTGTTCAGGAGCTTATCAAAGATCAGGTTGCAAACATGTATCTATGGCCCAAAACCTTGGAAGTTCAAGTGTTAGATATGTCAAAAGCCTTGAAGAGGCCTGTTGGAATTTTACATGTAAAGGTTCTGCAAGCAATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTAAAGCTTACTGAGGATAAATTGCCATCAAAAAAGACTACTGTGAAGCACAATAACTTAAATCCTGAATGGAATGAAGAATTCAATATAGTTGTTAAAGATCCAGACTCCCAGGTTTTAGAGATTAATGTTTATGACTGGGAGCAGGTTGGGAAGCGTGACAAGATGGGTATGAATGTGATCCCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTTTTACTCTTGACCTCCTAAAAAATATGGATCCTAATGATGCCCAAAATGAGAAGTCACGAGGGCAGATTGTTGTAGAATTGACATATAAACCCTTCAAGGAGGAGGATTTGGGCAAGGGGTTTGAAGAGACACAGACAGTACCAAAAGCTCCTGAAGGTACTCCAGCTGGTGGAGGTTTGCTTGTAGTTATAGTCCATGAAGCTCAAGACGTTGAAGGAAAGTATCACACTAATCCACATGTACGCCTTATTTTCAGAGGGGATGAGAAAAAAACCAAGCGCATTAAAAAGAACAGAGATCCAAGATGGGAAGATGAGTTCCAGTTTATGGTGGACGAGCCTCCCACCAATGATAGATTACATGTGGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCACCAAAAGGAATCATTGGGTTATATCGACATCAATCTTGGGGATGTTGTTGCCAACAAAAGAATCAATGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCCTCCAGATAGAGTTGCAGTGGAGAACCTCGGAAGCATGA

>Glyma.12g032400.3 sequence-type=CDS polypeptide=Glyma.12g032400.3.p locus=Glyma.12g032400 ID=Glyma.12g032400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCATATAATATGAACTTTCTTAACACTTTTGTTAAATTCACATTCATAGGGATGAAAGTTTTTGTGACTGATGAGAAGGAGTTAATTATGGAGCCTTCTGTAAAATGGGCTGGAAATCCTAATGTCACTGTTTCTGTTAAGGCATTTGGGTTGAAAGCAACTGTGCAGGTTGTGGATTTACAAGTTTTCCTCTTGCCTCGCATTACTTTGAAGCCTTTGGTTCCTAGCTTTCCGTGCTTTGCCAACATATACGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTCATAGGGGCTGATCTTATGTCTATTCCGGGAGTCTACAGGATTGTTCAGGAGCTTATCAAAGATCAGGTTGCAAACATGTATCTATGGCCCAAAACCTTGGAAGTTCAAGTGTTAGATATGTCAAAAGCCTTGAAGAGGCCTGTTGGAATTTTACATGTAAAGGTTCTGCAAGCAATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTAAAGCTTACTGAGGATAAATTGCCATCAAAAAAGACTACTGTGAAGCACAATAACTTAAATCCTGAATGGAATGAAGAATTCAATATAGTTGTTAAAGATCCAGACTCCCAGGTTTTAGAGATTAATGTTTATGACTGGGAGCAGGTTGGGAAGCGTGACAAGATGGGTATGAATGTGATCCCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTTTTACTCTTGACCTCCTAAAAAATATGGATCCTAATGATGCCCAAAATGAGAAGTCACGAGGGCAGATTGTTGTAGAATTGACATATAAACCCTTCAAGGAGGAGGATTTGGGCAAGGGGTTTGAAGAGACACAGACAGTACCAAAAGCTCCTGAAGGTACTCCAGCTGGTGGAGGTTTGCTTGTAGTTATAGTCCATGAAGCTCAAGACGTTGAAGGAAAGTATCACACTAATCCACATGTACGCCTTATTTTCAGAGGGGATGAGAAAAAAACCAAGCGCATTAAAAAGAACAGAGATCCAAGATGGGAAGATGAGTTCCAGTTTATGGTGGACGAGCCTCCCACCAATGATAGATTACATGTGGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCACCAAAAGGAATCATTGGGTTATATCGACATCAATCTTGGGGATGTTGTTGCCAACAAAAGAATCAATGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCCTCCAGATAGAGTTGCAGTGGAGAACCTCGGAAGCATGA

>Glyma.12g032400.1.p sequence-type=predicted peptide transcript=Glyma.12g032400.1 locus=Glyma.12g032400 ID=Glyma.12g032400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGFFGTILGFLGFGVGISIGLVSGYFLFIYFQPTNVEDPEIKPLSEQEQETLQRMFPEIPLWIKNPDFDRLDWLNKFVEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKVFVTDEKELIMEPSVKWAGNPNVTVSVKAFGLKATVQVVDLQVFLLPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQELIKDQVANMYLWPKTLEVQVLDMSKALKRPVGILHVKVLQAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHNNLNPEWNEEFNIVVKDPDSQVLEINVYDWEQVGKRDKMGMNVIPLKEVSPEEPKRFTLDLLKNMDPNDAQNEKSRGQIVVELTYKPFKEEDLGKGFEETQTVPKAPEGTPAGGGLLVVIVHEAQDVEGKYHTNPHVRLIFRGDEKKTKRIKKNRDPRWEDEFQFMVDEPPTNDRLHVEVVSTSSRNLLHQKESLGYIDINLGDVVANKRINEKYHLIDSKNGRLQIELQWRTSEA*

>Glyma.12g032400.2.p sequence-type=predicted peptide transcript=Glyma.12g032400.2 locus=Glyma.12g032400 ID=Glyma.12g032400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKVFVTDEKELIMEPSVKWAGNPNVTVSVKAFGLKATVQVVDLQVFLLPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQELIKDQVANMYLWPKTLEVQVLDMSKALKRPVGILHVKVLQAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHNNLNPEWNEEFNIVVKDPDSQVLEINVYDWEQVGKRDKMGMNVIPLKEVSPEEPKRFTLDLLKNMDPNDAQNEKSRGQIVVELTYKPFKEEDLGKGFEETQTVPKAPEGTPAGGGLLVVIVHEAQDVEGKYHTNPHVRLIFRGDEKKTKRIKKNRDPRWEDEFQFMVDEPPTNDRLHVEVVSTSSRNLLHQKESLGYIDINLGDVVANKRINEKYHLIDSKNGRLQIELQWRTSEA*

>Glyma.12g032400.3.p sequence-type=predicted peptide transcript=Glyma.12g032400.3 locus=Glyma.12g032400 ID=Glyma.12g032400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSYNMNFLNTFVKFTFIGMKVFVTDEKELIMEPSVKWAGNPNVTVSVKAFGLKATVQVVDLQVFLLPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQELIKDQVANMYLWPKTLEVQVLDMSKALKRPVGILHVKVLQAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHNNLNPEWNEEFNIVVKDPDSQVLEINVYDWEQVGKRDKMGMNVIPLKEVSPEEPKRFTLDLLKNMDPNDAQNEKSRGQIVVELTYKPFKEEDLGKGFEETQTVPKAPEGTPAGGGLLVVIVHEAQDVEGKYHTNPHVRLIFRGDEKKTKRIKKNRDPRWEDEFQFMVDEPPTNDRLHVEVVSTSSRNLLHQKESLGYIDINLGDVVANKRINEKYHLIDSKNGRLQIELQWRTSEA*







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