Report for Sequence Feature Glyma.12g032200
Feature Type: gene_model
Chromosome: Gm12
Start: 2416369
stop: 2417788
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.12g032200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G34990.1 AT
myb domain protein 32
JGI N/A IEA
GO:0006357 GO-bp
regulation of transcription by RNA polymerase II
EnsemblGenomes N/A IEA
GO:0030154 GO-bp
cell differentiation
EnsemblGenomes N/A IEA
GO:0005634 GO-cc
nucleus
EnsemblGenomes N/A IEA
GO:0000981 GO-mf
RNA polymerase II transcription factor activity, sequence-specific DNA binding
EnsemblGenomes N/A IEA
GO:0001135 GO-mf
transcription factor activity, RNA polymerase II transcription factor recruiting
EnsemblGenomes N/A IEA
GO:0003677 GO-mf
DNA binding
EnsemblGenomes N/A IEA
GO:0003682 GO-mf
chromatin binding
JGI N/A IEA
GO:0043565 GO-mf
sequence-specific DNA binding
EnsemblGenomes N/A IEA
GO:0044212 GO-mf
transcription regulatory region DNA binding
EnsemblGenomes N/A IEA
KOG0048
KOG
Transcription factor, Myb superfamily
JGI N/A IEA
PTHR10641 Panther
MYB-LIKE DNA-BINDING PROTEIN MYB
JGI N/A IEA
PF00249 PFAM
Myb-like DNA-binding domain
JGI N/A IEA
Proteins Associated with Glyma.12g032200
Locus Gene Symbol Protein Name
MYB54 MYB transcription factor MYB54
Expression Patterns of Glyma.12g032200
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.12g032200
Paralog Evidence Comments
Glyma.11g107100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.12g032200 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma12g03600 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.12g032200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.12g032200.1 sequence-type=CDS polypeptide=Glyma.12g032200.1.p locus=Glyma.12g032200 ID=Glyma.12g032200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGGTCCCCTTGCTGTGAGAAAGCTCACACAAACAAAGGTGCATGGACTAAAGAAGAAGATGACAGACTCATATCTTATATTCGAGCTCACGGAGAAGGCTGCTGGCGTTCACTCCCCAAAGCCGCCGGCCTTCTCCGGTGCGGCAAGAGCTGCCGTCTCCGGTGGATCAACTACCTCCGCCCCGACCTCAAAAGAGGTAACTTTACCGAAGAAGAAGATGAACTCATCATCAAACTCCACAGTCTCCTCGGTAACAAGTGGTCTTTGATAGCTGGAAGATTGCCGGGGAGAACAGACAATGAAATAAAGAATTATTGGAACACGCACATAAGAAGGAAGCTTTTGAACAGAGGAATCGACCCTGCTACTCATAGGCCACTCAACGAAGCTGCTTCTGCTGCAACTGTTACAACTGCCACCACTAATATATCTTTTGGGAAACAACAAGAACAAGAGACAAGTTCTAGTAACGGAAGCGTTGTTAAAGGTTCCATCTTGGAACGCTGCCCTGACTTGAACCTTGAGTTAACCATTAGTCCTCCTCGCCAACAACAACCTCAGAAGAATCTTTGTTTTGTTTGCAGTTTGGGTTTGAACAACAGCAAGGATTGTAGCTGCAACGTTGCCAACACTGTTACTGTTACTGTCAGCAACACTACTCCTTCTTCTGCTGCTGCTGCTGCTGCTGCTGCTTATGATTTCTTGGGCATGAAAACCAACGGTGTTTGGGATTGCACCCGCTTGGAAATGAAATGA
Predicted protein sequences of Glyma.12g032200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.12g032200.1.p sequence-type=predicted peptide transcript=Glyma.12g032200.1 locus=Glyma.12g032200 ID=Glyma.12g032200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEAASAATVTTATTNISFGKQQEQETSSSNGSVVKGSILERCPDLNLELTISPPRQQQPQKNLCFVCSLGLNNSKDCSCNVANTVTVTVSNTTPSSAAAAAAAAYDFLGMKTNGVWDCTRLEMK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
