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Report for Sequence Feature Glyma.12g024700

Feature Type:gene_model
Chromosome:Gm12
Start:1807036
stop:1808259
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g024700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G16600.1AT rotamase CYP 3 JGI N/AIEA
GO:0000413GO-bp protein peptidyl-prolyl isomerization EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding JGI N/AIEA
GO:0003755GO-mf peptidyl-prolyl cis-trans isomerase activity EnsemblGenomesN/AIEA
GO:0003755GO-mf peptidyl-prolyl cis-trans isomerase activity JGI N/AIEA
GO:0016853GO-mf isomerase activity EnsemblGenomesN/AIEA
KOG0865 KOG Cyclophilin type peptidyl-prolyl cis-trans isomerase JGI N/AIEA
PTHR11071Panther PEPTIDYL-PROLYL CIS-TRANS ISOMERASE JGI N/AIEA
PTHR11071:SF161Panther JGI N/AIEA
PF00160PFAM Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JGI N/AIEA

Proteins Associated with Glyma.12g024700
LocusGene SymbolProtein Name
CYP2 peptidyl-prolyl cis-trans isomerase CYP2
CYP Cytochrome

Expression Patterns of Glyma.12g024700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g024700
ParalogEvidenceComments
Glyma.11g098700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g024700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g02790 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g024700
>Glyma.12g024700.1 sequence-type=CDS polypeptide=Glyma.12g024700.1.p locus=Glyma.12g024700 ID=Glyma.12g024700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTAACCCTAAGGTCTTCTTCGACATGACCATCGGCGGTCAACCTGCCGGCCGCATCGTGATGGAGCTCTACGCCGACGTGACTCCGAGCACCGCCGAGAACTTCCGCGCGCTCTGCACCGGCGAGAAGGGCGCCGGGCGGAGCGGCAAGCCCCTCCACTACAAAGGCTCGTCCTTCCACCGCGTGATCCCGAACTTCATGTGCCAGGGCGGCGACTTCACCGCCGGAAACGGCACCGGAGGCGAGTCGATCTACGGCGCCAAGTTCGCCGACGAGAACTTCGTGAAGAAGCACACTGGTCCCGGCATCCTCTCCATGGCGAACGCCGGTCCCGGAACCAACGGATCTCAGTTCTTCATCTGCACGACGAAGACGGAGTGGCTCGACGGAAAGCACGTCGTGTTCGGACAGGTCGTCGAGGGGATGGACGTCGTCAAGGAGATAGAGAAGGTCGGATCCAGCTCCGGCAGGACCGCCAAGCCTGTCGTCGTCGCCGACTGTGGTCAACTCTCTTAG
Predicted protein sequences of Glyma.12g024700
>Glyma.12g024700.1.p sequence-type=predicted peptide transcript=Glyma.12g024700.1 locus=Glyma.12g024700 ID=Glyma.12g024700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPNPKVFFDMTIGGQPAGRIVMELYADVTPSTAENFRALCTGEKGAGRSGKPLHYKGSSFHRVIPNFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFFICTTKTEWLDGKHVVFGQVVEGMDVVKEIEKVGSSSGRTAKPVVVADCGQLS*






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