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Report for Sequence Feature Glyma.12g023900

Feature Type:gene_model
Chromosome:Gm12
Start:1743620
stop:1747015
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g023900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G21190.1AT ER lumen protein retaining receptor family protein JGI N/AIEA
GO:0006621GO-bp protein retention in ER lumen EnsemblGenomesN/AIEA
GO:0006621GO-bp protein retention in ER lumen JGI N/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0046923GO-mf ER retention sequence binding EnsemblGenomesN/AIEA
GO:0046923GO-mf ER retention sequence binding JGI N/AIEA
KOG3106 KOG ER lumen protein retaining receptor JGI N/AIEA
PTHR10585Panther ER LUMEN PROTEIN RETAINING RECEPTOR JGI N/AIEA
PF00810PFAM ER lumen protein retaining receptor JGI N/AIEA

Expression Patterns of Glyma.12g023900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g023900
ParalogEvidenceComments
Glyma.11g098000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g023900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g02680 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g023900
>Glyma.12g023900.1 sequence-type=CDS polypeptide=Glyma.12g023900.1.p locus=Glyma.12g023900 ID=Glyma.12g023900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGACCTCAGAGAACGTCGATCCACGCCGTCACGACATGGGTGAGGCGACAGCCCCCAAAGGTGAAGGCTTTTCTCGCCGTCGTTTCCGGCATGGCGGCCCTCGTCCTCCTTCGCTTCATCGTCCACGATCACGACAACCTCTTCGTCGCTGCCGAGGCTGTCCACTCCCTCGGAATTTCCGTCCTCATCTACAAGCTCATGAAGGAGAGGACATGTGCTGGGTTATCACTCAAATCCCAGGAATTAACGGCTATCTTTTTAGCTGTTAGGCTGTACTGCAGTTTTGTCATGGAATATGATATCCACACCTTACTTGATTTCGCTACTTTCGTAACAACGCTCTGGGTTATATACATGATTCGTTTTAAGCTGAAGGCTAGCTACATGGAAGAGAAGGATAACTTTGCAATATACTATGTGGTGGTACCCTGTGCTGTGTTAGCCTTGCTCATTCATCCATCAACTTCTCATCATTTATTAAACAGGATTTCCTGGGCATTCTGTGTATATCTAGAAGCTGTCTCAGTCCTGCCCCAACTGCGGGTCATGCAGAACACCAAGATTGTTGAACCTTTCACAGCTCATTATGTATTTGCATTGGGTGTTGCAAGATTCTTGAGCTGCGCTCATTGGGTTCTTCAGGTGTTAGATAGCCGTGGGCATTTGCTGGTGGCCTTGGGGTATGGTTTATGGCCATCAATGGTTCTTATCTCGGAAATTGTCCAGACCTTCATCTTAGCAGATTTCTGTTACTATTATGTCAAAAGTGTCTTCGGGGGACAACTTGTTCTACGTCTTCCCTCTGGAGTGGTGTGA
Predicted protein sequences of Glyma.12g023900
>Glyma.12g023900.1.p sequence-type=predicted peptide transcript=Glyma.12g023900.1 locus=Glyma.12g023900 ID=Glyma.12g023900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRPQRTSIHAVTTWVRRQPPKVKAFLAVVSGMAALVLLRFIVHDHDNLFVAAEAVHSLGISVLIYKLMKERTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHTLLDFATFVTTLWVIYMIRFKLKASYMEEKDNFAIYYVVVPCAVLALLIHPSTSHHLLNRISWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPSGVV*






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