Glyma.12g022800

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Report for Sequence Feature Glyma.12g022800

Feature Type:	gene_model
Chromosome:	Gm12
Start:	1675697
stop:	1677804
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12g022800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G45970.1	AT	expansin-like A1	JGI	N/A	IEA
GO:0019953	GO-bp	sexual reproduction	EnsemblGenomes	N/A	IEA
GO:0005576	GO-cc	extracellular region	EnsemblGenomes	N/A	IEA
PF01357	PFAM	Pollen allergen	JGI	N/A	IEA
PF03330	PFAM	Rare lipoprotein A (RlpA)-like double-psi beta-barrel	JGI	N/A	IEA

Expression Patterns of Glyma.12g022800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g022800 not represented in the dataset	Glyma.12g022800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.12g022800

Paralog	Evidence	Comments
Glyma.11g096700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g022800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma12g02550	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.12g022800

Limit To All Plant Sequences

>Glyma.12g022800.2 sequence-type=transcript locus=Glyma.12g022800 ID=Glyma.12g022800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCATAGATACGCAGGGTCGGTGAGTGAGTGAAGTCAGAAAGTGACCCCATTTAGTTTCATTTCATTCTTATCTGATACCAATGCCTTTTTGGAAAAATGCTGACCTGTGAGACCTTATATATATATACCTTGCTTTCTGAACCAACAAAACCAAACAACAAACATTCATGGCTttctttattttctccttcctcttccttcttcttgtttcatcttccactgcttGTGATCGCTGCTTGCACCAATCCAAGGCTTCCTATTTCTCCAAAGCTTCTGCtctttcatCTGGGGCATGTGGGTATGGCTCTTTGGCACTAGACATAAGTGGTGGACACCTTGCAGCTGGTGTGGCTTCTCTCTTCAAAGATGGAGCAGTTTGTGGTGCCTGCTTTCAGATAAGATGCAAGAACCCAACTCTATGCAGCAAAGAAGGTACCAGAGTGGTATTGACTGATCTTAATCACAATAATCAAACTGATTTTGTGCTAAGCAGCAGAGCCTTTGCGGGCATGGCTCAAAAGGGTATGGGCAAACAAATATTGAAGCTTGGCATTGCTGACATTGAATACAAGAGAGTACCTTGTGAATACAAAAAACAGAATTTAGCCGTTCGTGTTGAAGAATCAAGCAAGAAGCCAGAATACTTAGCAATTAAATTTTTGTATCAAGGGGGACAAACGGAGATAGTAGCCGTTGATGTGGCTCAGGTGTGTTGCAAGACATAAAACATTAGTATTACCAAATTATTTGTTATTTGGTTGAATAAAATTTGCTAACCGTTGCCTTGGTGGGTTACTATTATTTATTAGGTTGGGTCTTCAAACTGGAGCTTCATGAGCAGAAGCGACGGGGCAGTGTGGGACACAAGCAGGGTACCCCAAGGTGCATTGCAATTTAGGTTAGTGGTAACGGCAGGGTATGATGGCAAGTGGATTTGGGCAAAGAAGGTCCTACCTGCTGATTGGAAAAATGGACTTATATATGATTCTGGCCTTCAGATAACAGACATTGCACAAGAGGGTTGCTCCCCCTGCGACGATGGAACCTGGTCATGATTCATTGCTTTGCTGCTGAAGAATAACTCACATATACACATACATATAGCCATAAATTTTATTAATATAATAGTATAGGCTCATAAAGCAACTTATAATACTAAGGAATCATGAGTAGCTTAATAAATTTGAAAAGCATTCTTATTTCTGAACCACTCGACTTCGTTCTTTATATTCTTTCTTCTTGTAAGTTGTAAGTTGTAACCAACCAAAATAATAGACTTTTCTTTTTGGAATATATGAATTACATTTTTACTTTTTTTTTAGATGAGCATCAAAGGTATTCTTCAACCAATAACTTACGGTGTATTAAGTTTAGAAGAGAGAAACATAGAAGACAGCTTTTTTAATTA

Coding sequences of Glyma.12g022800

Limit To All Plant Sequences

>Glyma.12g022800.1 sequence-type=CDS polypeptide=Glyma.12g022800.1.p locus=Glyma.12g022800 ID=Glyma.12g022800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTCTTTATTTTCTCCTTCCTCTTCCTTCTTCTTGTTTCATCTTCCACTGCTTGTGATCGCTGCTTGCACCAATCCAAGGCTTCCTATTTCTCCAAAGCTTCTGCTCTTTCATCTGGGGCATGTGGGTATGGCTCTTTGGCACTAGACATAAGTGGTGGACACCTTGCAGCTGGTGTGGCTTCTCTCTTCAAAGATGGAGCAGTTTGTGGTGCCTGCTTTCAGATAAGATGCAAGAACCCAACTCTATGCAGCAAAGAAGGTACCAGAGTGGTATTGACTGATCTTAATCACAATAATCAAACTGATTTTGTGCTAAGCAGCAGAGCCTTTGCGGGCATGGCTCAAAAGGGTATGGGCAAACAAATATTGAAGCTTGGCATTGCTGACATTGAATACAAGAGAGTACCTTGTGAATACAAAAAACAGAATTTAGCCGTTCGTGTTGAAGAATCAAGCAAGAAGCCAGAATACTTAGCAATTAAATTTTTGTATCAAGGGGGACAAACGGAGATAGTAGCCGTTGATGTGGCTCAGGTTGGGTCTTCAAACTGGAGCTTCATGAGCAGAAGCGACGGGGCAGTGTGGGACACAAGCAGGGTACCCCAAGGTGCATTGCAATTTAGGTTAGTGGTAACGGCAGGGTATGATGGCAAGTGGATTTGGGCAAAGAAGGTCCTACCTGCTGATTGGAAAAATGGACTTATATATGATTCTGGCCTTCAGATAACAGACATTGCACAAGAGGGTTGCTCCCCCTGCGACGATGGAACCTGGTCATGA

>Glyma.12g022800.2 sequence-type=CDS polypeptide=Glyma.12g022800.2.p locus=Glyma.12g022800 ID=Glyma.12g022800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTCTTTATTTTCTCCTTCCTCTTCCTTCTTCTTGTTTCATCTTCCACTGCTTGTGATCGCTGCTTGCACCAATCCAAGGCTTCCTATTTCTCCAAAGCTTCTGCTCTTTCATCTGGGGCATGTGGGTATGGCTCTTTGGCACTAGACATAAGTGGTGGACACCTTGCAGCTGGTGTGGCTTCTCTCTTCAAAGATGGAGCAGTTTGTGGTGCCTGCTTTCAGATAAGATGCAAGAACCCAACTCTATGCAGCAAAGAAGGTACCAGAGTGGTATTGACTGATCTTAATCACAATAATCAAACTGATTTTGTGCTAAGCAGCAGAGCCTTTGCGGGCATGGCTCAAAAGGGTATGGGCAAACAAATATTGAAGCTTGGCATTGCTGACATTGAATACAAGAGAGTACCTTGTGAATACAAAAAACAGAATTTAGCCGTTCGTGTTGAAGAATCAAGCAAGAAGCCAGAATACTTAGCAATTAAATTTTTGTATCAAGGGGGACAAACGGAGATAGTAGCCGTTGATGTGGCTCAGGTGTGTTGCAAGACATAA

Predicted protein sequences of Glyma.12g022800

Limit To All Plant Sequences

>Glyma.12g022800.1.p sequence-type=predicted peptide transcript=Glyma.12g022800.1 locus=Glyma.12g022800 ID=Glyma.12g022800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFFIFSFLFLLLVSSSTACDRCLHQSKASYFSKASALSSGACGYGSLALDISGGHLAAGVASLFKDGAVCGACFQIRCKNPTLCSKEGTRVVLTDLNHNNQTDFVLSSRAFAGMAQKGMGKQILKLGIADIEYKRVPCEYKKQNLAVRVEESSKKPEYLAIKFLYQGGQTEIVAVDVAQVGSSNWSFMSRSDGAVWDTSRVPQGALQFRLVVTAGYDGKWIWAKKVLPADWKNGLIYDSGLQITDIAQEGCSPCDDGTWS*

>Glyma.12g022800.2.p sequence-type=predicted peptide transcript=Glyma.12g022800.2 locus=Glyma.12g022800 ID=Glyma.12g022800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFFIFSFLFLLLVSSSTACDRCLHQSKASYFSKASALSSGACGYGSLALDISGGHLAAGVASLFKDGAVCGACFQIRCKNPTLCSKEGTRVVLTDLNHNNQTDFVLSSRAFAGMAQKGMGKQILKLGIADIEYKRVPCEYKKQNLAVRVEESSKKPEYLAIKFLYQGGQTEIVAVDVAQVCCKT*

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