Glyma.12g021800

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Report for Sequence Feature Glyma.12g021800

Feature Type:	gene_model
Chromosome:	Gm12
Start:	1572976
stop:	1574844
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12g021800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20060.1	AT	ubiquitin-conjugating enzyme19	JGI	N/A	IEA
GO:0000209	GO-bp	protein polyubiquitination	EnsemblGenomes	N/A	IEA
GO:0030071	GO-bp	regulation of mitotic metaphase/anaphase transition	EnsemblGenomes	N/A	IEA
GO:0031145	GO-bp	anaphase-promoting complex-dependent catabolic process	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0016881	GO-mf	acid-amino acid ligase activity	JGI	N/A	IEA
GO:0031625	GO-mf	ubiquitin protein ligase binding	EnsemblGenomes	N/A	IEA
GO:0061630	GO-mf	ubiquitin protein ligase activity	EnsemblGenomes	N/A	IEA
KOG0421	KOG	Ubiquitin-protein ligase	JGI	N/A	IEA
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI	N/A	IEA
PTHR24067:SF26	Panther	UBIQUITIN-CONJUGATING ENZYME E2-17 KDA	JGI	N/A	IEA
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI	N/A	IEA

Expression Patterns of Glyma.12g021800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g021800 not represented in the dataset	Glyma.12g021800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.12g021800

Paralog	Evidence	Comments
Glyma.11g095700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g021800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma12g02460	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.12g021800

Limit To All Plant Sequences

>Glyma.12g021800.2 sequence-type=transcript locus=Glyma.12g021800 ID=Glyma.12g021800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCTGAATGTTGGTAAAACTATATCAATTTAGAGATTAAGTTTATGTATATTCAATATTTAAGGATTATATGAGAGAAAGAATTATGATTGAGGGACTAAATTTGTGGTTTATTCGTTTGTCTTTATATCTAATTCGTTCCTTGTTTTGTGTTGTGAAACAGGCTGCAATCTGAATTGATGGCTTTGATGATGAGTGGAGATTCTGGGATATCTGCGTTTCCTGAGGAGGACAACATATTCTTCTGGAAGGGAACAATAACAGGAAGCAAAGATACTGTGTTTGAAGGCACAGAGTATAAGCTATCACTCTCCTTCCCCAATGACTACCCTTTCAAGCCTCCAAAAGTCAAGTTTGAAACAACCTGCTTCCACCCCAATTTTGATGTGCATGGCAACATATGCTTGGACATACTCCAGGATAAATGGTCATCTGCTTATGATGTCAGAACAATTCTTCTATCTATCCAAAGTCTGCTTGGAGAGCCAAACATTAGTTCACCACTAAACCAACAAGCAGCACAGCTTTGGAGCAATCAAGAAGAATACAGGAAGATGGTGGAGAAGTTGTACAAATCTGCAAATTGATCAGTCTTTTGCAGGAGAGAAGAAGGAAGGGTCCATAGAGTCTGCTTCTGAGAAGAGAAAGGATGAAGCCGTTATTTGTTTTTAGGTGTCCTTTTCTGATGGGCCTGCTTTCATATAATATAATCTTACAATTTACGAATTGTTGCATGTTTCTTTCTCTTCTTTACAATTGGAAGTTAAAAAAAAAAAGATTttgtttttcgtcgttttgtgt

Coding sequences of Glyma.12g021800

Limit To All Plant Sequences

>Glyma.12g021800.1 sequence-type=CDS polypeptide=Glyma.12g021800.1.p locus=Glyma.12g021800 ID=Glyma.12g021800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCCACTAATAACATTCATGGGAACACTGAATCTGCTCAATCCAACATTGCTCCTCCCACTAAGCAGCCTCTACATCCTTCTAAGACTGTTGATTCTCAATCTGTACTCAAAAGGCTGCAATCTGAATTGATGGCTTTGATGATGAGTGGAGATTCTGGGATATCTGCGTTTCCTGAGGAGGACAACATATTCTTCTGGAAGGGAACAATAACAGGAAGCAAAGATACTGTGTTTGAAGGCACAGAGTATAAGCTATCACTCTCCTTCCCCAATGACTACCCTTTCAAGCCTCCAAAAGTCAAGTTTGAAACAACCTGCTTCCACCCCAATTTTGATGTGCATGGCAACATATGCTTGGACATACTCCAGGATAAATGGTCATCTGCTTATGATGTCAGAACAATTCTTCTATCTATCCAAAGTCTGCTTGGAGAGCCAAACATTAGTTCACCACTAAACCAACAAGCAGCACAGCTTTGGAGCAATCAAGAAGAATACAGGAAGATGGTGGAGAAGTTGTACAAATCTGCAAATTGA

>Glyma.12g021800.2 sequence-type=CDS polypeptide=Glyma.12g021800.2.p locus=Glyma.12g021800 ID=Glyma.12g021800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTGATGATGAGTGGAGATTCTGGGATATCTGCGTTTCCTGAGGAGGACAACATATTCTTCTGGAAGGGAACAATAACAGGAAGCAAAGATACTGTGTTTGAAGGCACAGAGTATAAGCTATCACTCTCCTTCCCCAATGACTACCCTTTCAAGCCTCCAAAAGTCAAGTTTGAAACAACCTGCTTCCACCCCAATTTTGATGTGCATGGCAACATATGCTTGGACATACTCCAGGATAAATGGTCATCTGCTTATGATGTCAGAACAATTCTTCTATCTATCCAAAGTCTGCTTGGAGAGCCAAACATTAGTTCACCACTAAACCAACAAGCAGCACAGCTTTGGAGCAATCAAGAAGAATACAGGAAGATGGTGGAGAAGTTGTACAAATCTGCAAATTGA

Predicted protein sequences of Glyma.12g021800

Limit To All Plant Sequences

>Glyma.12g021800.1.p sequence-type=predicted peptide transcript=Glyma.12g021800.1 locus=Glyma.12g021800 ID=Glyma.12g021800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAATNNIHGNTESAQSNIAPPTKQPLHPSKTVDSQSVLKRLQSELMALMMSGDSGISAFPEEDNIFFWKGTITGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETTCFHPNFDVHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNQQAAQLWSNQEEYRKMVEKLYKSAN*

>Glyma.12g021800.2.p sequence-type=predicted peptide transcript=Glyma.12g021800.2 locus=Glyma.12g021800 ID=Glyma.12g021800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALMMSGDSGISAFPEEDNIFFWKGTITGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETTCFHPNFDVHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNQQAAQLWSNQEEYRKMVEKLYKSAN*

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