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Report for Sequence Feature Glyma.12g019400

Feature Type:gene_model
Chromosome:Gm12
Start:1358460
stop:1363523
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g019400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G04590.1AT sulfite reductase JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0019419GO-bp sulfate reduction EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016002GO-mf sulfite reductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0020037GO-mf heme binding EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding JGI N/AIEA
GO:0050311GO-mf sulfite reductase (ferredoxin) activity EnsemblGenomesN/AIEA
GO:0051536GO-mf iron-sulfur cluster binding EnsemblGenomesN/AIEA
GO:0051536GO-mf iron-sulfur cluster binding JGI N/AIEA
GO:0051539GO-mf 4 iron, 4 sulfur cluster binding EnsemblGenomesN/AIEA
KOG0560 KOG Sulfite reductase (ferredoxin) JGI N/AIEA
PTHR11493Panther FAMILY NOT NAMED JGI N/AIEA
PTHR11493:SF2Panther JGI N/AIEA
PF01077PFAM Nitrite and sulphite reductase 4Fe-4S domain JGI N/AIEA
PF03460PFAM Nitrite/Sulfite reductase ferredoxin-like half domain JGI N/AIEA
SULFMETII-PWYSoyCyc9 sulfate reduction II (assimilatory) Plant Metabolic Network ISS
GN7V-41969SoyCyc9-rxn sulfite reductase (ferredoxin) Plant Metabolic Network ISS

Expression Patterns of Glyma.12g019400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g019400
ParalogEvidenceComments
Glyma.11g093200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g019400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g02200 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g019400
>Glyma.12g019400.1 sequence-type=CDS polypeptide=Glyma.12g019400.1.p locus=Glyma.12g019400 ID=Glyma.12g019400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGACGTCGTTCGGAGGACCAGCCACCACCTCAGCGCCGCTCAAGGACACCAAGCTTCAGATCCCAAGCTTCCATTGCTTCAGCTCTGCTTCCGCCTCTGCTCTCTCGCGCAATGCCCTCTCCCTTCCTTCTTCCACGCGCTCTTTCTCCCTCATACGTGCTGTTTCCACGCCTGCGCAGTCCGAAACTGCCACTGTCAAGCGCAGCAAAGTCGAAATATTCAAAGAACAAAGCAATTTCATAAGATATCCTCTTAATGAGGACATGCTGACGGATGCCCCTAATATAGGTGAAGCCGCCACTCAGTTGATCAAGTTTCATGGTAGCTATCAACAGTACAATAGAGAGGAGCGTGGTTCCAGAAGCTACTCTTTCATGATTCGCACTAAGAACCCCTGCGGGAAGGTTTCCAACCAACTTTACCTCACCATGGATGATCTTGCTGATCAGTTTGGGATTGGGACGCTTCGCTTGACCACCAGGCAGACGTTTCAGCTCCATGGTGTTCTCAAGAAGGACCTTAAAACGGTGATGGCTACCATTATTAGAAACATGGGCTCCACTCTTGGTGCGTGCGGCGACCTAAACAGGAATGTGCTTGCTCCTGCTGCTCCCCTTGTGAGAAAAGATTACCTCTTTGCTCAACAAACTGCCGAGAACATTGCTGCGCTCCTCGCTCCTCAGTCTGGTTTCTACTATGACATCTGGGTCGATGGGGAAAAGTTTTTGACTTCAGAACCACCTGAAGTAGTTCAGGCACGAAATGACAATTCTCATGGTACAAACTTTCCAGATTCCCCCGAGCCTATCTATGGAACTCAGTTCTTGCCAAGGAAATTCAAAATTGCCGTTACTGTGCCAACTGATAACTCGGTGGATATTCTCACGAATGATATTGGTGTTGTTGTTGTTATGGATGATGATGGGGAGCCTCAAGGGTTCAACATATATGTTGGTGGTGGAATGGGAAGAACTCATAGGTTAGAAACCACTTTTCCTCGCTTGGCCGAACCATTAGGTTATGTACCAAAGGAGGATATTTTGTATGCAGTGAAAGCCATTGTTGTTACACAACGAGAAAATGGGAGAAGAGATGACCGCAAGTATAGTAGATTGAAATATTTGATAAGCTCTTGGGGAATTGAAAAGTTTAGAGGCGTAGTTGAGCAATATTATGGCAAGAAATTTGAACCTTTCCGTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAGGGCGATGGCAAGTTTTTTTATGGTCTTCATGTTGATAATGGTCGTATTGGTGGAAAGATGAAAAAGACATTGAGGGAGGTTATTGAGAAATATAATTTGAATGCAAGAATCACTCCAAATCAGAATATCATCTTGACTGATGTTCGTGCTGCATGGAAGCGTCCAATTACAACCACTCTTGCTCAAGCTGGTTTGCTGCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCTTTCCCATTATGTCCTCTGGCAATTACTGAAGCTGAGCGTGGGATACCTAACATTCTTAAGCGGATTCGTGCTGTTTTTGATAAGGTTGGCCTGAAGTATAGTGAGTCTGTGGTTGTAAGGATAACTGGCTGCCCTAATGGTTGTGCTAGACCATACATGGCTGAGCTTGGACTAGTTGGTGATGGCCCAAATAGCTATCAGATTTGGCTTGGAGGAAACCATAAACAAACATCATTAGCTCGAAGTTTCATGGACAGGGTGAAGCTTCTAGACCTTGAAAAAGTTTTGGAGCCTTTGTTTTATTATTGGAAGCAAAAGCGTCAATCTAAAGAATCATTTGGTGACTTCACAAACAGAATGGGATTTGAGAAGCTTAAAGAATATATTGAGAAATGGGAGGGTCCAGTGGTAGCACCATCACGCCACAACCTCAAGCTTTTTGCTGATAAGGAGACATATGAAGCAATGGATGAATTAGCAAAGCTTCAAAACAAGAATGCTCATCAGTTGGCCATGGAAGTTATCCGTAATTATGTTGCTACCAACCAAAATGGAAAGGGTGAATAA
Predicted protein sequences of Glyma.12g019400
>Glyma.12g019400.1.p sequence-type=predicted peptide transcript=Glyma.12g019400.1 locus=Glyma.12g019400 ID=Glyma.12g019400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTSFGGPATTSAPLKDTKLQIPSFHCFSSASASALSRNALSLPSSTRSFSLIRAVSTPAQSETATVKRSKVEIFKEQSNFIRYPLNEDMLTDAPNIGEAATQLIKFHGSYQQYNREERGSRSYSFMIRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMATIIRNMGSTLGACGDLNRNVLAPAAPLVRKDYLFAQQTAENIAALLAPQSGFYYDIWVDGEKFLTSEPPEVVQARNDNSHGTNFPDSPEPIYGTQFLPRKFKIAVTVPTDNSVDILTNDIGVVVVMDDDGEPQGFNIYVGGGMGRTHRLETTFPRLAEPLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRLKYLISSWGIEKFRGVVEQYYGKKFEPFRALPEWEFKSYLGWHEQGDGKFFYGLHVDNGRIGGKMKKTLREVIEKYNLNARITPNQNIILTDVRAAWKRPITTTLAQAGLLQPRFVDPLNITAMACPAFPLCPLAITEAERGIPNILKRIRAVFDKVGLKYSESVVVRITGCPNGCARPYMAELGLVGDGPNSYQIWLGGNHKQTSLARSFMDRVKLLDLEKVLEPLFYYWKQKRQSKESFGDFTNRMGFEKLKEYIEKWEGPVVAPSRHNLKLFADKETYEAMDELAKLQNKNAHQLAMEVIRNYVATNQNGKGE*






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