Glyma.12g013100

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Report for Sequence Feature Glyma.12g013100

Feature Type:	gene_model
Chromosome:	Gm12
Start:	946483
stop:	947858
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12g013100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25200.1	AT	mitochondrion-localized small heat shock protein 23.6	JGI	N/A	IEA
GO:0005739	GO-cc	mitochondrion	EnsemblGenomes	N/A	IEA
KOG0710	KOG	Molecular chaperone (small heat-shock protein Hsp26/Hsp42)	JGI	N/A	IEA
PTHR11527	Panther	SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY	JGI	N/A	IEA
PTHR11527:SF17	Panther	23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL-RELATED	JGI	N/A	IEA
PF00011	PFAM	Hsp20/alpha crystallin family	JGI	N/A	IEA

Proteins Associated with Glyma.12g013100

Locus	Gene Symbol	Protein Name
	HSP23.9	low molecular weight heat shock protein Hsp23.9

Expression Patterns of Glyma.12g013100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g013100 not represented in the dataset	Glyma.12g013100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.12g013100

Paralog	Evidence	Comments
Glyma.09g223800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g013100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma12g01580	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.12g013100

Limit To All Plant Sequences

>Glyma.12g013100.2 sequence-type=transcript locus=Glyma.12g013100 ID=Glyma.12g013100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTACTCTGGAACCTTCTGACCTTTTTCTAGGGTCTTCTAGCTCCTCTCAAGTCCCAACCATTCCCCTTATATCACCCACTCTCACTCCCCATTTCCCTGCACAAAGATTTTTTCCCAGCTTGCTCATCAAGTCCAAGAACCAACCTACCTTTTGCAATCTCAATTCAATGGCGTCCTCTCTCATTGCGAAGCGCTTCCTCTCCTCTTCCCTCCTCTCCAGGTCCCTCCTTCGCCCCGCCGCTTCCGCTTCCCACCGCTCTTTCAACACCAACGCCATGCGCCAGTATGACAACCGCGCCGACGACCACAGCACCGACATCGATCGTCACTCCGAACGCTCTTTCCCTAGCACTGCGCGCCGCGACGATATCTTCTCAGATGTGTTGGATCCATTTTTTCCGACTCGGAGTTTGAGCCAGGTTCTGAACATGATGGACCAGGTCATGGACAATCCGTTCCTCTCCGCGTCGCGCGGGATCGGAGCTGGCGCTGGAGTGCGTCGCGGATGGGACGCGAGGGAGACAGAGGATGCTCTGCATCTGCGCGTGGACATGCCTGGGCTCGGCAAGGAAGACGTGAAGATCTCCGTGGAGCAGAACACTCTCATTATCAAAGGTGAAGGTGCTAAAGAAGGCGATGAAGAAGAGAGCGCTCGTCGCTACACTAGCAGGATTGACTTGCCGGACAAGCTCTACAAGATTGACCAGATCAGAGCTGAGATGAAGAACGGTGTGCTCAAGGTCGTTGTGCCGAAAATGAAGGAGGAAGAGAGGAAAGACGTGATCAGTGTTAAGGTTGAGTAGAACAACCCAAGCTGATTTGGCCATTTTGCATCGACACTACTCTTTAGTTTTCTTTTATTAGGTGGTGATGAATCTAGTTAGTAGATATAACAGCTTAATAGTATTGTTGCTGTGTTTGGTTTTGAAACTTCAAACGTATCTGTAATAATTGTTATATAGAGTTGTGAATGAGCTTGTTGTTTAGAAGTCTACTGCAGTCTGAATTTGACTTGTCAATGAAATTCGTGTCATTTTAAATTCGTAAAATCAAGCGTTTCCCT

Coding sequences of Glyma.12g013100

Limit To All Plant Sequences

>Glyma.12g013100.1 sequence-type=CDS polypeptide=Glyma.12g013100.1.p locus=Glyma.12g013100 ID=Glyma.12g013100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCCTCTCTCATTGCGAAGCGCTTCCTCTCCTCTTCCCTCCTCTCCAGGTCCCTCCTTCGCCCCGCCGCTTCCGCTTCCCACCGCTCTTTCAACACCAACGCCATGCGCCAGTATGACAACCGCGCCGACGACCACAGCACCGACATCGATCGTCACTCCGAACGCTCTTTCCCTAGCACTGCGCGCCGCGACGATATCTTCTCAGGTAATGTGTTGGATCCATTTTTTCCGACTCGGAGTTTGAGCCAGGTTCTGAACATGATGGACCAGGTCATGGACAATCCGTTCCTCTCCGCGTCGCGCGGGATCGGAGCTGGCGCTGGAGTGCGTCGCGGATGGGACGCGAGGGAGACAGAGGATGCTCTGCATCTGCGCGTGGACATGCCTGGGCTCGGCAAGGAAGACGTGAAGATCTCCGTGGAGCAGAACACTCTCATTATCAAAGGTGAAGGTGCTAAAGAAGGCGATGAAGAAGAGAGCGCTCGTCGCTACACTAGCAGGATTGACTTGCCGGACAAGCTCTACAAGATTGACCAGATCAGAGCTGAGATGAAGAACGGTGTGCTCAAGGTCGTTGTGCCGAAAATGAAGGAGGAAGAGAGGAAAGACGTGATCAGTGTTAAGGTTGAGTAG

>Glyma.12g013100.2 sequence-type=CDS polypeptide=Glyma.12g013100.2.p locus=Glyma.12g013100 ID=Glyma.12g013100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCCTCTCTCATTGCGAAGCGCTTCCTCTCCTCTTCCCTCCTCTCCAGGTCCCTCCTTCGCCCCGCCGCTTCCGCTTCCCACCGCTCTTTCAACACCAACGCCATGCGCCAGTATGACAACCGCGCCGACGACCACAGCACCGACATCGATCGTCACTCCGAACGCTCTTTCCCTAGCACTGCGCGCCGCGACGATATCTTCTCAGATGTGTTGGATCCATTTTTTCCGACTCGGAGTTTGAGCCAGGTTCTGAACATGATGGACCAGGTCATGGACAATCCGTTCCTCTCCGCGTCGCGCGGGATCGGAGCTGGCGCTGGAGTGCGTCGCGGATGGGACGCGAGGGAGACAGAGGATGCTCTGCATCTGCGCGTGGACATGCCTGGGCTCGGCAAGGAAGACGTGAAGATCTCCGTGGAGCAGAACACTCTCATTATCAAAGGTGAAGGTGCTAAAGAAGGCGATGAAGAAGAGAGCGCTCGTCGCTACACTAGCAGGATTGACTTGCCGGACAAGCTCTACAAGATTGACCAGATCAGAGCTGAGATGAAGAACGGTGTGCTCAAGGTCGTTGTGCCGAAAATGAAGGAGGAAGAGAGGAAAGACGTGATCAGTGTTAAGGTTGAGTAG

Predicted protein sequences of Glyma.12g013100

Limit To All Plant Sequences

>Glyma.12g013100.1.p sequence-type=predicted peptide transcript=Glyma.12g013100.1 locus=Glyma.12g013100 ID=Glyma.12g013100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSLIAKRFLSSSLLSRSLLRPAASASHRSFNTNAMRQYDNRADDHSTDIDRHSERSFPSTARRDDIFSGNVLDPFFPTRSLSQVLNMMDQVMDNPFLSASRGIGAGAGVRRGWDARETEDALHLRVDMPGLGKEDVKISVEQNTLIIKGEGAKEGDEEESARRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDVISVKVE*

>Glyma.12g013100.2.p sequence-type=predicted peptide transcript=Glyma.12g013100.2 locus=Glyma.12g013100 ID=Glyma.12g013100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSLIAKRFLSSSLLSRSLLRPAASASHRSFNTNAMRQYDNRADDHSTDIDRHSERSFPSTARRDDIFSDVLDPFFPTRSLSQVLNMMDQVMDNPFLSASRGIGAGAGVRRGWDARETEDALHLRVDMPGLGKEDVKISVEQNTLIIKGEGAKEGDEEESARRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDVISVKVE*

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