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Report for Sequence Feature Glyma.12g012200

Feature Type:gene_model
Chromosome:Gm12
Start:890741
stop:894275
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.12g012200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07970.1AT QRT2 JGI N/AIEA
3.2.1.15EC endo-polygalacturonase JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0004650GO-mf polygalacturonase activity JGI N/AIEA
PTHR31375PantherFam FAMILY NOT NAMED JGI N/AIEA
PF00295Pfam Glycosyl hydrolases family 28 JGI N/AIEA

Proteins Associated with Glyma.12g012200
LocusGene SymbolProtein Name
PG11 polygalacturonase precursor

Gene model name correspondences to Glyma.12g012200 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g01480 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g012200
>Glyma.12g012200.1 sequence-type=CDS polypeptide=Glyma.12g012200.1.p locus=Glyma.12g012200 id=Glyma.12g012200.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTCTCCACAAACGCCAACTATCCCACTTTTCATTGTCCTCGCTTCATTAGTCTTATGTAATGGCTATTACTTAGAGGAATCATTTTATAAAACAAATGCTAAACACTACCCTGTGCATGATGGGAGATTGATCAAGACAAAACACGAGCATTTTGGTCTAATAACAAGGGCTAATAGAGCTAGCCATCTTACTTCTAGGCCTCGTGGAACAGTTAGTGTTGATGACTTTGGAGCCAAAGCAGATGGAAGTGATGACAGCGAGGCATTTGGGAAGGCATGGAATGAAGCATGTTCTAGAGGGGCTATCCTTGTGGTACCTGAAAATAGGATCTATCGTCTTAAGCCAATAATATTTTCTGGTCCATGTCGACCCAACACTGCCTTTATGCTCTATGGAACAATCGAGGCATGGTCTCAAATGTCGGCATACCAAGAAGATAGACAACATTGGATTGTGTTTGATAGTGTTTCAAATTTCAGAGTTGGTGGTGGTGGCACATTCAATGGCAAAGGGAAAAAGTGGTGGCAAAGCTCCTGCAAAGTCAACACTAACCTTCCATGCAACGACGGACCAAGACCAAAAGCCGTGACTTTCTATCAATGCAACAATTTGAAAGTGACAAACCTGAGGTTTAAAGATGCACCGCAAATGCATGTGGTCTTTGAAGGATGCTTCAATGTTATTGTTTCGAATCTCGTCATCAGAGCACCAGGTGACAGCCCCAACACTGATGGAATTCATGTCGCAGACACACAAAATATTGTCATAAGTAACAGTGACATTGGGACAGGTGATGATTGTATTTCAATAATAAGCGGGTCCCAAAACGTAAGAGCCACAGATATTACCTGCGGACCTGGACATGGAATAAGCATTGGAAGCTTGGGAGCAGATAACTCGGAAGCTGAAGTCTCTAATGTGGTAGTGAACAGAGCAACCTTAACAGGAACGACTAATGGAGTGAGAATAAAGACTTGGCAGGGAGGTTCTGGTTATGCAAGGAACATTAAATTTTTGAACATAGCGATGCAAAATGTGACAAATCCCATAATCATAGATCAATACTACTGTGATCAATCGAAGCCATGCCAAGAGCAGGACTCAGCTGTGCAATTAAGCAATGTGTTGTACCAAAACATAAAAGGAACAAGTGCCTCAGAAGTGGCTATCAAATTTGACTGCAGCCGAGCCGTCCCTTGCAGACAAATTTACGTTCAGGATGTGATTTTAGAACCCCAAGGCCATGGTGGCACCATTGCTACATGTGAACATGTTAGTTATGTCAACAGAGGAAAGTTTTTTCCTCAATGCACTCCATGA
Predicted protein sequences of Glyma.12g012200
>Glyma.12g012200.1.p sequence-type=predicted peptide transcript=Glyma.12g012200.1 locus=Glyma.12g012200 id=Glyma.12g012200.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSPQTPTIPLFIVLASLVLCNGYYLEESFYKTNAKHYPVHDGRLIKTKHEHFGLITRANRASHLTSRPRGTVSVDDFGAKADGSDDSEAFGKAWNEACSRGAILVVPENRIYRLKPIIFSGPCRPNTAFMLYGTIEAWSQMSAYQEDRQHWIVFDSVSNFRVGGGGTFNGKGKKWWQSSCKVNTNLPCNDGPRPKAVTFYQCNNLKVTNLRFKDAPQMHVVFEGCFNVIVSNLVIRAPGDSPNTDGIHVADTQNIVISNSDIGTGDDCISIISGSQNVRATDITCGPGHGISIGSLGADNSEAEVSNVVVNRATLTGTTNGVRIKTWQGGSGYARNIKFLNIAMQNVTNPIIIDQYYCDQSKPCQEQDSAVQLSNVLYQNIKGTSASEVAIKFDCSRAVPCRQIYVQDVILEPQGHGGTIATCEHVSYVNRGKFFPQCTP*






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