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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G45900.1 | AT | ThiF family protein | JGI | N/A | IEA |
| GO:0000045 | GO-bp | autophagosome assembly | EnsemblGenomes | N/A | IEA |
| GO:0000422 | GO-bp | autophagy of mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0006501 | GO-bp | C-terminal protein lipidation | EnsemblGenomes | N/A | IEA |
| GO:0006914 | GO-bp | autophagy | EnsemblGenomes | N/A | IEA |
| GO:0006995 | GO-bp | cellular response to nitrogen starvation | EnsemblGenomes | N/A | IEA |
| GO:0010150 | GO-bp | leaf senescence | EnsemblGenomes | N/A | IEA |
| GO:0034727 | GO-bp | piecemeal microautophagy of the nucleus | EnsemblGenomes | N/A | IEA |
| GO:0044805 | GO-bp | late nucleophagy | EnsemblGenomes | N/A | IEA |
| GO:0050832 | GO-bp | defense response to fungus | EnsemblGenomes | N/A | IEA |
| GO:0000407 | GO-cc | phagophore assembly site | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0008641 | GO-mf | ubiquitin-like modifier activating enzyme activity | EnsemblGenomes | N/A | IEA |
| GO:0019778 | GO-mf | Atg12 activating enzyme activity | EnsemblGenomes | N/A | IEA |
| GO:0019779 | GO-mf | Atg8 activating enzyme activity | EnsemblGenomes | N/A | IEA |
| KOG2337 | KOG | Ubiquitin activating E1 enzyme-like protein | JGI | N/A | IEA |
| PTHR10953 | Panther | UBIQUITIN-ACTIVATING ENZYME E1 | JGI | N/A | IEA |
| PF00899 | PFAM | ThiF family | JGI | N/A | IEA |
| PWY-6823 | SoyCyc9 | molybdenum cofactor biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-66989 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| ATG7 | autophagy-related protein ATG7 |
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Glyma.12g010000 not represented in the dataset |
Glyma.12g010000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma12g01250 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.12g010000.1 sequence-type=CDS polypeptide=Glyma.12g010000.1.p locus=Glyma.12g010000 ID=Glyma.12g010000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGGCTTTGCTGCAATTCGCACCGATGCAGAGCTCCGTTGATGAGGGTTTCTGGCACCGTTTGTCTTCTTTGAAGCTCAACAAGCTTGGCATTGACCATTCTCCAATTCCCTTATTCGGTTTTTATGCACCGTGCTCTCACTCTCAAGTATCAAATCATTTAACTGTTTTAGCTGAGTCTTTACCTTCTGAATTGAGTGAGGCATCATTAATCCCTGAACCCAGCCGCGGCAACCGGAACAGGTGTTCTGTTCCAGGGATACTTTACAACACTAATACTGTGGAAAGCTTCCATGCACTTGATAAGAGTGACCTGTTGAAGAAAGAGGCAGCAAAGATATGGGATGACATTCTAACTGGAAAAGCTGTGGAGGACTGTTCAGTACTTTCAACATTCCTTGTTATTTCTTTTGCTGACTTGAAAAAGTGGACTTTCAACTACTGGTTTGCTTTCCCGGCTCTGATGCTTGATCCTCCTGCCACTGTGGTTAATCTAAAGCCAGCTTCTCAGTGGTTCAGCGCAGCAGAGGCTGAATCACTCTCTGCAGCTTGTAACGAGTGGCGTAGCTCAAAATCAAAAACAGATGTCCCGTTTTTTTTAGTCACTATAGATCCAAACTCACGTGCTACTGTTAGGCTTCTGAAGGACTGGGAAGCATGTCAGAGCAATGCTCACAAGATCCTTTTTGGATTTTATGACCCATGTCATCTACCAAATAATCCTGGATGGCCTCTTCGCAACTTCTTAGCACTTATTTCTGCGAGGTGGAATCTCAACTCTGTTCAATTTTTCTGCTACAGAGAGAACCGTGGTTTTGCAGATATGAGGTTGTCCCTTGTTGGTGAAGCACTGATAACAGTTCCACAAGGGTGGAAAGACACTGTGCCTAGTGCAGTTGGATGGGAACTTAATAAGGGGAGAAAAGCTCCTAGGTGTATAAGCCTTGCGCAGTCCATGGATCCAACCAGGTTGGCCATATCTGCTGCAGATTTGAATTTAAAGCTGATGAGGTGGCGTGCTTTGCCTTCTTTAAACTTGAATGCCTTATCTTCCATGAAGTGTCTTCTCCTCGGAGCTGGAACACTTGGATGCCAGGTTGCGCGCATGCTTATGGCATGGGGTGTTCGAAAAATTACTCTAGTTGACAATGGAAGGGTGGCTATGTCTAACCCATTGAGGCAGTCTCTTTATACTTTGGATGACTGTCTTAATGGTGGGGAATTTAAAGCTACGGCAGCAGTTGAAAGTCTTAAACGGATATTTCCAGCAGTGGAAGCAGAAGGCATTGTTATGGCTATACCAATGCCTGGACATCCAGTACAAAGCCAGGAACAGGACAGTGTGCTTGATGATTGTAAACGTTTGTGTGATTTAATTGATGCTCATGATTCCGTTTTTTTATTGACTGATACAAGGGAAAGTCGATGGCTCCCAACACTTCTCTGTGCCAATACTAACAAGATTACTGTTACTGCTGCACTGGGGTTTGATAGTTTCTTGGTTATGCGCCATGGAGCTGGTCCTTTATCTGCGGATATGCCAGTAAATAATGCAAATGGAAAACATAGATTGGGCTGTTATTTCTGCAATGATGTCGTGGCACCAACCGATTCAACATCCAACCGCACTTTGGACCAGCAATGTACTGTGACCCGACCAGGGCTAGCTCCTATTGCTTCAGCCCTTGCAGTTGAACTTTTAGTAGGGATTTTGCATCATCCTCAAGGGATATTTGCCGAAGGTGATATTAACAACAGTGTCACTGGAGCTACTGAGCAACCTCTTGGTATTTTGCCTCATCAGATTCGTGGTTCCCTTTCTCAATTTTCTCAAATGACCCTTATAGGTTACTCCTCCTCCAGCTGCACAGCCTGTAGTCATACAGTTGTATCAGAATATCGAAACCAAGGAATGGAGTTCATACTTCAAGCAATTAATTATCCTACCTTCCTAGAGGATGTCACTGGACTGACAGAGTTGATGAAATCGGCCACCTCGTTGTCATTGGATTGGGACAAGGAGATAGACGAGGAGGAGGACTGTGTTGAAATTCAATAA
>Glyma.12g010000.1.p sequence-type=predicted peptide transcript=Glyma.12g010000.1 locus=Glyma.12g010000 ID=Glyma.12g010000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEALLQFAPMQSSVDEGFWHRLSSLKLNKLGIDHSPIPLFGFYAPCSHSQVSNHLTVLAESLPSELSEASLIPEPSRGNRNRCSVPGILYNTNTVESFHALDKSDLLKKEAAKIWDDILTGKAVEDCSVLSTFLVISFADLKKWTFNYWFAFPALMLDPPATVVNLKPASQWFSAAEAESLSAACNEWRSSKSKTDVPFFLVTIDPNSRATVRLLKDWEACQSNAHKILFGFYDPCHLPNNPGWPLRNFLALISARWNLNSVQFFCYRENRGFADMRLSLVGEALITVPQGWKDTVPSAVGWELNKGRKAPRCISLAQSMDPTRLAISAADLNLKLMRWRALPSLNLNALSSMKCLLLGAGTLGCQVARMLMAWGVRKITLVDNGRVAMSNPLRQSLYTLDDCLNGGEFKATAAVESLKRIFPAVEAEGIVMAIPMPGHPVQSQEQDSVLDDCKRLCDLIDAHDSVFLLTDTRESRWLPTLLCANTNKITVTAALGFDSFLVMRHGAGPLSADMPVNNANGKHRLGCYFCNDVVAPTDSTSNRTLDQQCTVTRPGLAPIASALAVELLVGILHHPQGIFAEGDINNSVTGATEQPLGILPHQIRGSLSQFSQMTLIGYSSSSCTACSHTVVSEYRNQGMEFILQAINYPTFLEDVTGLTELMKSATSLSLDWDKEIDEEEDCVEIQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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