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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G71250.1 | AT | GDSL-like Lipase/Acylhydrolase superfamily protein | JGI | N/A | IEA |
| GO:0000373 | GO-bp | Group II intron splicing | EnsemblGenomes | N/A | IEA |
| GO:0000724 | GO-bp | double-strand break repair via homologous recombination | EnsemblGenomes | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | JGI | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0003690 | GO-mf | double-stranded DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003697 | GO-mf | single-stranded DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0016788 | GO-mf | hydrolase activity, acting on ester bonds | JGI | N/A | IEA |
| GO:0050897 | GO-mf | cobalt ion binding | EnsemblGenomes | N/A | IEA |
| PTHR22835 | Panther | ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN | JGI | N/A | IEA |
| PTHR22835:SF39 | Panther | JGI | N/A | IEA | |
| PF00657 | PFAM | GDSL-like Lipase/Acylhydrolase | JGI | N/A | IEA |
| LIPAS-PWY | SoyCyc9 | triacylglycerol degradation | Plant Metabolic Network | ISS | |
| GN7V-40959 | SoyCyc9-rxn | triacylglycerol lipase | Plant Metabolic Network | ISS |
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Glyma.12g003000 not represented in the dataset |
Glyma.12g003000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.09g233900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
>Glyma.12g003000.1 sequence-type=CDS polypeptide=Glyma.12g003000.1.p locus=Glyma.12g003000 ID=Glyma.12g003000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGGAACAAGGGTGTATGGGAACATGCGAGCACAGCAGCAGTGCTTGTACTTGTGCTATGCTCGGTTGGGATTGCAAAAGTAAAGTCACAGTCACAGAAGGTACCTGGGTTGTTTGTTTTTGGAGATTCATTGGTTGAAGTTGGCAACAATACCTTCCTAAACACCATAGCAAGGGCAAATTACTTTCCTTACGGCATCGACTTCAGCAGGGGTTCCACTGGCCGATTTTCTAATGGCAAATCCCTCATTGACTTCATTGATCCCTCCACTATTGGAACCAGAATACTTTATGGTGTCAATTATGCATCTGCTTCTGCTCTGCCGGCATTCTTGACGAGTCAGGGAGACATTATGACAATGATGGATGCAAGTGCATTGAATCAGTTCTTAGCCAGTTCTATAGCAGTTGTGGTAACTGGAAGCAATGACTACATCAACAACTACCTCCTGCCTGGCTTATATGGCTCCAGTTATAATTATACTGCCCAACAGTTTGGCAATCTTCTTGTTAATAAATTTTGTCTGTGCCCAAACATGTTTATATATGTTGCAATGCAGGCACTACATAGCGTAGGATTAAGGAAGTTCTTCCTAGTAGGAATTGGGCCACTGGAGTGGTCTGGTGAGGTTCGGAATATCAGCTATTCCCCCGATTCCAAGTCTGTCTCTGTCGTCTACAGAGTTACCCTTTATGGGACTGATGCGGAGATTCCTTTTCATTTAGTCCATATTTATGGTACTGCTTCAGTAGATGACACAAGTTATGGAGATCCTGTACAGAAGGCAGAAGCAATTGCTTTTCGTAGAGCTTGTGCACGCTTTGGGCTGGGCCTCCACCTTTATCATCAAGAAGATGCATCATAA
>Glyma.12g003000.1.p sequence-type=predicted peptide transcript=Glyma.12g003000.1 locus=Glyma.12g003000 ID=Glyma.12g003000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MRNKGVWEHASTAAVLVLVLCSVGIAKVKSQSQKVPGLFVFGDSLVEVGNNTFLNTIARANYFPYGIDFSRGSTGRFSNGKSLIDFIDPSTIGTRILYGVNYASASALPAFLTSQGDIMTMMDASALNQFLASSIAVVVTGSNDYINNYLLPGLYGSSYNYTAQQFGNLLVNKFCLCPNMFIYVAMQALHSVGLRKFFLVGIGPLEWSGEVRNISYSPDSKSVSVVYRVTLYGTDAEIPFHLVHIYGTASVDDTSYGDPVQKAEAIAFRRACARFGLGLHLYHQEDAS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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