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Report for Sequence Feature Glyma.12g000800

Feature Type:gene_model
Chromosome:Gm12
Start:61139
stop:62670
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12g000800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G20230.1AT Ribosomal L18p/L5e family protein JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
GO:0008097GO-mf 5S rRNA binding EnsemblGenomesN/AIEA
KOG3333 KOG Mitochondrial/chloroplast ribosomal protein L18 JGI N/AIEA
PTHR12899Panther 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL JGI N/AIEA
PTHR12899:SF2Panther JGI N/AIEA
PF00861PFAM Ribosomal L18p/L5e family JGI N/AIEA

Expression Patterns of Glyma.12g000800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g000800 not represented in the dataset
Glyma.12g000800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12g000800
ParalogEvidenceComments
Glyma.08g238300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12g000800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g00280 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12g000800
>Glyma.12g000800.1 sequence-type=CDS polypeptide=Glyma.12g000800.1.p locus=Glyma.12g000800 ID=Glyma.12g000800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTGGTCTTCCGCAACAGCATGTGCGTCGCTCTCCTCTTCGACTCCGCTGCCTCGACTTCCACCGTCTCGCACTGGCACTCCCATTCCTGGTTCGCTTTCATTTTCATGGCTTTCTTCATTTCCCACTTTAACTTTAAGTGCTTCTCGTTCTCGCTCCTCCGGAATAAACCCTCCCAATCCCTCACGTTCCGATGATTCCTTCATTCGAGCTGCCTGGACCCGAAGATCTCGAGGTGAAGCTGCAAAGAAACCTAACAGGAAATCGTGGAAGCAGAGGACAGACATGTACATGAGACCATTCTTATTAAATGTTTTCTTCTCCAAAAGATTTATTCATGCAAAAGTGGTACACCGAGGAACCAGCAAAGTGATATGTGTTGCTACCACAAACGCCAAGGATCTTCGAAACTCCCTTCCATCCTTGATAGATCATAACGCTTGTAGAGTTGTTGGAAACCTTATTGCTCAACGATCAATGGAAGCTGATGTATATGCAGTAGCCTATGAACCTAGAAAGGATGAAAGGATTGAAGGCAGACTAGGGATCGTTCTTGATACTATTAAGGAAAACGGGATTATTTTTGCTTGA
Predicted protein sequences of Glyma.12g000800
>Glyma.12g000800.1.p sequence-type=predicted peptide transcript=Glyma.12g000800.1 locus=Glyma.12g000800 ID=Glyma.12g000800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGWSSATACASLSSSTPLPRLPPSRTGTPIPGSLSFSWLSSFPTLTLSASRSRSSGINPPNPSRSDDSFIRAAWTRRSRGEAAKKPNRKSWKQRTDMYMRPFLLNVFFSKRFIHAKVVHRGTSKVICVATTNAKDLRNSLPSLIDHNACRVVGNLIAQRSMEADVYAVAYEPRKDERIEGRLGIVLDTIKENGIIFA*






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