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Report for Sequence Feature Glyma.12G239600

Feature Type:gene_model
Chromosome:Gm12
Start:39841408
stop:39844950
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12G239600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48060.1AT C2 calcium/lipid-binding plant phosphoribosyltransferase family protein JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG1028 KOG Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis JGI N/AIEA
PTHR10024Panther SYNAPTOTAGMIN JGI N/AIEA
PTHR10024:SF97Panther SYNAPTOTAGMIN-7 JGI N/AIEA
PF00168PFAM C2 domain JGI N/AIEA
PF08372PFAM Plant phosphoribosyltransferase C-terminal JGI N/AIEA

Proteins Associated with Glyma.12G239600
LocusGene SymbolProtein Name
C2-123 C2 domain containing protein gene 123

Expression Patterns of Glyma.12G239600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12G239600 not represented in the dataset
Glyma.12G239600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12G239600
ParalogEvidenceComments
Glyma.09g003400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12G239600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g239600 Wm82.a4.v1ISS As supplied by JGI
Glyma12g36831 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12G239600
>Glyma.12g239600.1 sequence-type=CDS polypeptide=Glyma.12g239600.1.p locus=Glyma.12g239600 ID=Glyma.12g239600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAACTGGTTGTGGAGGTTATTAATGCTCATGATCTTATGCCCAAAGATGGCGAGGGATCAGCCAGTCCATTTGTGGAAGTAGACTTTGAAAACCAGCTTAGCCGAACCAGAACTGTCCCAAAGAACCTCAACCCCACTTGGAACCAAAAACTAATCTTCAATTTAGATGCAACCAAACCTTACCATTGCAAAACAATTGAAGTATCGGTCTACAACGAGAGGCGACTTACTCCAGGCAGAAACTTCCTTGGAAGGGTGAGAATTCCTTGCTCTAATATTGTCAAGGAAGGTGAGGAAGTGTATCAGATTTTCCCCCTTGAAAAGAAGTGGTTTCTCTCACCTGTTAAGGGTGAGATTGGCCTCAAAATATACATTGCATCAGAGTCGAACTCCAAACCAATACCTCTTTCTCCTGTTTTCCCTTCAGAACAAGAAAAACTCCCACCTTCTACTCCACCCCAAGAACCAGAATCCACCTCTAGTAACCTTCCTCCTCCTCATAGTATCCCCTCAGGCCTAACTGACAGAACATTAGAAGCTGATCCCAGTGAAGAACTTCCTGCATTTGACACCCCAAGAGCAAGCACAGAAGAAGCAGAAGTATATTCTGTTGCAGAAGCTCAGTCTATCAGTGTTGATATCGATCAAGAGCCAAAGAAAGAAAGCAGAGAAGCTGTCATAGAGACAGTCCAACAACTAAACAAGCACCAAGTTCTCCAGCCACAAATTATTTCAATAAAGAGAAGACCACAAGGTACTCCATCCACCATGCACTCAGTTGATCCTCAAGTTCAATCTAGCCATCATAAAAACTATAATCACAATGACACCAATCAACAGCCAAGGATTTCAATAAAGAGGCGACCACAAGCACAAGGTACTCCATTCACAATGCACTCAGTTGATCCACAAGTCCAACCTAGCCATGGTGAAAGCTACAATCATAATGACACCAACATGCAGCCAAGGATTTCAATTAAGAGACGACCACGAGGACCAGGTACTCCATCTCCAATGCACTCCTTTAATCCACAAGTCCATGCTAGCCACAATGAAAGCTACAACAACCTCATGGGAACCAACCCACAACAGCCAAGAATTTTAGTAGAGAAACAACCACAGAATACTCCACTCACCACACACCAAGTTAGTCCCCAAGTCCCTACTAGCAATGATGAAAACTACAATCTCAGTGACACCAATGTGCAGCAGCTTGACAAGCGGTGGCCAAGTGATAGAGCTTATGGTAGAAGAGGGTGGGTGAGTGGTAGTGACAGATTCACTAGCACGTATGACCTTGTTGAGCAGATGTTTTATCTGTATGTTCGTGTTGTGAAGGCGAAAGTTCTTCCCCCAAGCACCATCACCTCAAGCTGTGATCCTTATGTGGAAGTGAAGCTGGGGAACTACAAAGGAAGAACAAAGCACTTTGAGAAGAAATTGAACCCAGAGTGGAACCAAGTGTTTGCTTTCTCCAAAGATCGCATTCAGTCTTCTGTTTTAGAAGTCTTCGTGAAAGATAAAGCAATGGTGGGGAGGGATGACTATCTTGGAAGGGTAGTTTTTGACCTCAATGAGGTTCCAACAAGAGTTCCACCAGATAGTCCACTAGCTCCTCAGTGGTACCGACTTGAGGACTGGTGCGAAGAAGGCAAGGTGAGGGGTGACATTATGCTTGCAGTTTGGATGGGAACACAAGCTGATGAGGCTTTCTCTGAAGCTTGGCATTCTGATGCTGCCACTGTCTATGGGGAGGGCGTTTTCAACATCAGATCAAAGGTTTACATGTCACCAAAACTGTGGTATCTCAGAGTCAATGTAATAGAAGCTCAAGATGTGATACCGGGTGACAGAAACCGCCTACCGGAGGTTTTTGTGAAAGCTCAAGTGAGCTGCCAAGTGCTGACAACCAAGATATGCCCCAGCAGAACAACCACCCCATTCTGGAACGAAGATTTGATCTTTGTAGCCTGTGAGCCATTTGAGGAGCAATTAACAATCACTGTGGAGGATCGTGTGCACCCTTCAAAAGATGAGGTACTGGGGAAGATAAGCCTACCAATGACCCTCTTTGAGAAGCGATTAGACCATAGGCCGGTTCATTCACGCTGGTTCAATCTTGAGAAATTTGGTTTTGGAATGCTAGAAGGTGATAGAAGAAATGAGCTCAAGTTTTCAAGCAGGATTCACATGAGAATTTGCCTTGAAGGTGGATACCATGTCTTAGATGAGTCCACATTGTACACTAGTGATCAAAGGCCAACATCAAGACAGCTATGGAAGCAACCTATTGGAATACTTGAAGTGGGCATCTTAGGTGCACAGGGGCTTCTCCCAATGAAGATGAGGGATGGCAGAGGCAGCACAGATGCATACTGTGTTGCCAAGTATGGTCAGAAATGGGTCAGAACCAGAACACTTTTGGACACTTTCAGTCCTAAATGGAACGAACAATACACATGGGAGGTCTATGATCCTTGCACAGTGATAACATTGGGAGTTTTTGACAACTGCCATTTAGGTGGAGGGGAAAAAGCCCCTGGTGGCAGTGCTGCTAGAGATTCTCGGATTGGAAAGGTAAGAATAAGGCTATCAACACTTGAAGCTAATAGGATTTACACCAATTCTCACCCTCTTCTTGTTCTACACCCCCATGGAGTTAAGAAGATGGGTGAGCTTCAGTTAGCAGTGAGGTTCACAGCACTCTCACTAGCCAACATGGTTCATATCTATGGCCAACCCTTGCTCCCCAAGATGCATTACTTACATCCATTCACAGTTAACCAAATAGACAACCTCAGGTACCAAGCCATGAACATTGTAGCTGTGAGGCTAGGCCAAGCTGAACCGCCTTTGAGGAAGGAGGTGGTGGAGTACATGTTGGATGTTGATTCTCATATGTGGAGTATGAGAAGAAGCAAGGCTAACTTCTTCCGCATCATGTCCCTTTTCTCTGGTATGATCACAATGGGAAAGTGGTGCAGTGATGTTTGCCTTTGGAAGAACCACGTTACATCAGTCCTGGTTCATATTCTTTTCCTGATACTGATATGGTACCCGGAATTGATCCTGCCAACCATGTTTCTCTATATGTTCTTGATTGGTCTGTGGAACTACAGGTTCCGGCCTAGACACCCGCCTCACATGGATACTAAACTCTCATGGGCAGAAGCCATTCACCCCGACGAACTCGATGAAGAGTTTGACACATTTCCCACTTCAAGATCACATGACGTTGTGAGAATGAGGTATGACAGGCTTAGAACTGTGGCAGGTAGGATTCAGACAGTTGTTGGGGACATAGCTACACAAGGGGAGAGGTTTCAGTCTCTACTGAGTTGGAGAGACCCCAGAGCAACCAGCCTCTTTGTAGTGTTTAGCTTCTGTGCTGCTGTGGTTCTCTATGCAACTCCATTCAGAGTGGTGGCTCTGGTGACAGGTTTATACTTTTTGCGGCATCCAAAGTTTAGGAGCAAGACGCCTTCTATACCAAGTAATTTCTTCAAGAGGCTCCCAGCTAGAACAGATAGTTTGCTGTGA
Predicted protein sequences of Glyma.12G239600
>Glyma.12g239600.1.p sequence-type=predicted peptide transcript=Glyma.12g239600.1 locus=Glyma.12g239600 ID=Glyma.12g239600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKLVVEVINAHDLMPKDGEGSASPFVEVDFENQLSRTRTVPKNLNPTWNQKLIFNLDATKPYHCKTIEVSVYNERRLTPGRNFLGRVRIPCSNIVKEGEEVYQIFPLEKKWFLSPVKGEIGLKIYIASESNSKPIPLSPVFPSEQEKLPPSTPPQEPESTSSNLPPPHSIPSGLTDRTLEADPSEELPAFDTPRASTEEAEVYSVAEAQSISVDIDQEPKKESREAVIETVQQLNKHQVLQPQIISIKRRPQGTPSTMHSVDPQVQSSHHKNYNHNDTNQQPRISIKRRPQAQGTPFTMHSVDPQVQPSHGESYNHNDTNMQPRISIKRRPRGPGTPSPMHSFNPQVHASHNESYNNLMGTNPQQPRILVEKQPQNTPLTTHQVSPQVPTSNDENYNLSDTNVQQLDKRWPSDRAYGRRGWVSGSDRFTSTYDLVEQMFYLYVRVVKAKVLPPSTITSSCDPYVEVKLGNYKGRTKHFEKKLNPEWNQVFAFSKDRIQSSVLEVFVKDKAMVGRDDYLGRVVFDLNEVPTRVPPDSPLAPQWYRLEDWCEEGKVRGDIMLAVWMGTQADEAFSEAWHSDAATVYGEGVFNIRSKVYMSPKLWYLRVNVIEAQDVIPGDRNRLPEVFVKAQVSCQVLTTKICPSRTTTPFWNEDLIFVACEPFEEQLTITVEDRVHPSKDEVLGKISLPMTLFEKRLDHRPVHSRWFNLEKFGFGMLEGDRRNELKFSSRIHMRICLEGGYHVLDESTLYTSDQRPTSRQLWKQPIGILEVGILGAQGLLPMKMRDGRGSTDAYCVAKYGQKWVRTRTLLDTFSPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKAPGGSAARDSRIGKVRIRLSTLEANRIYTNSHPLLVLHPHGVKKMGELQLAVRFTALSLANMVHIYGQPLLPKMHYLHPFTVNQIDNLRYQAMNIVAVRLGQAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMSLFSGMITMGKWCSDVCLWKNHVTSVLVHILFLILIWYPELILPTMFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAIHPDELDEEFDTFPTSRSHDVVRMRYDRLRTVAGRIQTVVGDIATQGERFQSLLSWRDPRATSLFVVFSFCAAVVLYATPFRVVALVTGLYFLRHPKFRSKTPSIPSNFFKRLPARTDSLL*






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