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Report for Sequence Feature Glyma.12G239400

Feature Type:gene_model
Chromosome:Gm12
Start:39821588
stop:39826116
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12G239400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48020.1AT 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein JGI N/AIEA
KOG0143 KOG Iron/ascorbate family oxidoreductases JGI N/AIEA
PTHR10209Panther OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEIN JGI N/AIEA
PTHR10209:SF25Panther JGI N/AIEA
PWY-3101SoyCyc9 flavonol biosynthesis Plant Metabolic Network ISS
PWY-5391SoyCyc9 syringetin biosynthesis Plant Metabolic Network ISS
PWY-6787SoyCyc9 flavonoid biosynthesis (in equisetum) Plant Metabolic Network ISS
GN7V-66874SoyCyc9-rxn flavonol synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.12G239400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12G239400 not represented in the dataset
Glyma.12G239400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.12G239400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g239400 Wm82.a4.v1ISS As supplied by JGI
Glyma12g36810 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12G239400
>Glyma.12g239400.1 sequence-type=CDS polypeptide=Glyma.12g239400.1.p locus=Glyma.12g239400 ID=Glyma.12g239400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCTCCCCGTTATAGATCTTTCTCCCTCCCTCTCCGGCGAGTGGGACCCACTTCTCTGCGCCGAGGTCAGCCGCAGCCTCAGGGAAACCGGCGCGCTCCTCGTCAAGGACCCTCGCTGCACCGTCGAGGACAACGATCGCTTCATCGACATGATGGAGCGCTACTTCTCAAAACCCCGCGACTTCAAACACCGCCATGAGAGACCCCACTTGCATTACCAGGTTGGGGTTACACCAGAGAAAGTAGAAGTTCCAAGAAGCTTGGTTGATGAAGAAATGCAGGAGAAACTGAAAGCGATGCCAAAAGAAAACCAGCCAAACACTCCTGTTGGACCTGATCTCAAATGGAGATACTTTTGGAGGATCGGTCCTCGACCGTCAAATACTCGTTTTCAGGAACTTAATGCTGAGCCAGTAATACCTGAAGGTTTCCCTGAATGGAAAGAAACTATGGATTCCTGGGGATACAAAATGATAGCAGCAATTGAAGTGGTTGCTGAAATGGCAGCTATTGGGTTTGGTCTTCCAAAGGATGCATTCACTTCTCTTATGAAGCTGGGCCCGCATCTGTTAGCACCAACAGGGAGTGACCTTCAAAAATATGGTCAGGAGGGAACTATCTTTGCAGGATATCACTATGACCTTAACTTCCTAACAATTCATGGTAGAAGTAGATTTCCTGGTTTAAACATCTGGTTAAGAAATGGACAGAAAGTTGAAGTGAAGGTTCCAATAGGATGTCTTCTTATTCAGACAGGAAAGCAGATAGAGTGGTTAACTGGAGGGGACTGCATAGCTGGCATGCATGAGGTTGTTGCCACAAAGAGGACACTTGATGCAATAAGTTTAGCACAAGAGCAGAATCGTAGCTTATGGAGAGTCTCTTCAACGTTGTTTGCACACATAGCATCAGATGCAGTTCTGAAGCCATTGGGACATTTTGCAGAATCACCCCTTGCAAGCAAATATCCACCTATGTGTGCAGGAGAGTATGTTGAACAAGAGCTTTCAGTAATCAATCTCAAGGGAAAGAAGTGA
Predicted protein sequences of Glyma.12G239400
>Glyma.12g239400.1.p sequence-type=predicted peptide transcript=Glyma.12g239400.1 locus=Glyma.12g239400 ID=Glyma.12g239400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLPVIDLSPSLSGEWDPLLCAEVSRSLRETGALLVKDPRCTVEDNDRFIDMMERYFSKPRDFKHRHERPHLHYQVGVTPEKVEVPRSLVDEEMQEKLKAMPKENQPNTPVGPDLKWRYFWRIGPRPSNTRFQELNAEPVIPEGFPEWKETMDSWGYKMIAAIEVVAEMAAIGFGLPKDAFTSLMKLGPHLLAPTGSDLQKYGQEGTIFAGYHYDLNFLTIHGRSRFPGLNIWLRNGQKVEVKVPIGCLLIQTGKQIEWLTGGDCIAGMHEVVATKRTLDAISLAQEQNRSLWRVSSTLFAHIASDAVLKPLGHFAESPLASKYPPMCAGEYVEQELSVINLKGKK*






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