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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G42600.1 | AT | phosphoenolpyruvate carboxylase 2 | JGI | N/A | IEA |
| GO:0006099 | GO-bp | tricarboxylic acid cycle | EnsemblGenomes | N/A | IEA |
| GO:0006099 | GO-bp | tricarboxylic acid cycle | JGI | N/A | IEA |
| GO:0015977 | GO-bp | carbon fixation | EnsemblGenomes | N/A | IEA |
| GO:0015977 | GO-bp | carbon fixation | JGI | N/A | IEA |
| GO:0048366 | GO-bp | leaf development | EnsemblGenomes | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0048046 | GO-cc | apoplast | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0008964 | GO-mf | phosphoenolpyruvate carboxylase activity | EnsemblGenomes | N/A | IEA |
| GO:0008964 | GO-mf | phosphoenolpyruvate carboxylase activity | JGI | N/A | IEA |
| GO:0016829 | GO-mf | lyase activity | EnsemblGenomes | N/A | IEA |
| PF00311 | PFAM | Phosphoenolpyruvate carboxylase | JGI | N/A | IEA |
| PWY-6549 | SoyCyc9 | L-glutamine biosynthesis III | Plant Metabolic Network | ISS | |
| PWYQT-4429 | SoyCyc9 | CO2 fixation into oxaloacetate (anaplerotic) | Plant Metabolic Network | ISS | |
| GN7V-63575 | SoyCyc9-rxn | phosphoenolpyruvate carboxylase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| PEPC4 | phosphoenolpyruvate carboxylase | |
| PEPC7 | Phosphoenolpyruvate carboxylase 7 gene | |
| PEPC7 | Phosphoenolpyruvate carboxylase gene 7 | |
| ppc4 | Phosphoenolpyruvate carboxylase isoform |
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Glyma.12G210600 not represented in the dataset |
Glyma.12G210600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g290700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g210600 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma12g33820 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.12g210600.1 sequence-type=CDS polypeptide=Glyma.12g210600.1.p locus=Glyma.12g210600 ID=Glyma.12g210600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTGCTCGTAACATCGAGAAGATGGCCTCAATTGATGCTCAACTGAGGTTGCTGGCGCCACGCAAGGTGTCTGATGATGACAAACTCGTTGAGTATGATGCCTTGTTGTTGGATCGTTTCCTTGACATTCTTCAGGATTTGCATGGTGAAGATATCAGACAAACGGTCCAAGATTGTTACGAGCTGTCAGCTGAGTACGAAGGAGAGCATAAGCCTGAAAAGTTGGAGGAACTTGGGAATATGCTGACGGGTCTTGATGCTGGGGATTCAATTGTTATTGCCAAGTCATTTTCTCACATGCTCAATTTGGCCAACTTGGCAGAAGAAGTTCAAATTGCGTATCGAAGAAGGATCAAGTTACTGAAGAAGGGTGATTTTGCTGATGAGAACTCTGCCATTACTGAGTCAGACATTGAAGAGACCTTCAAGAAGCTTGTGGCTCAACTGAAGAAGACACCCCAGGAAATCTTTGATGCTTTGAAGAACCAAACTGTGGATTTGGTTCTAACTGCTCATCCTACTCAGTCTGTTCGCAGATCTTTGCTGCAAAAGCATGGAAGGATAAGGAATTGTTTGACACAATTATATGCTAAGGACATAACACCAGATGATAAGCAGGAACTTGATGAGGCTTTACAAAGAGAGATTCAAGCTGCATTTCGCACAGATGAAATTCGAAGGACTCCTCCTACCCCACAAGATGAGATGAGGGCAGGAATGAGCTACTTTCATGAGACAATTTGGAAAGGTGTACCACAGTTTCTGCGTCGGGTAGATACAGCTCTGAAGAACATTGGAATTAATGAACGTGTCCCATATAATGCTCCTGTTATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGGTAATCCTAGAGTAACCCCTGAAGTTACAAGGGATGTGTGTTTGCTGGCTAGAATGATGGCTGCTAATATGTACTTCTCTCAGATAGAGGATCTCATGTTTGAGTTGTCTATGTGGCGTTGCACTGACGAGCTACGTGTTCGTGCTCATGAACTCCATAGGTCCTCAAAGAGAGATGCAAAACATTATATTGAGTTTTGGAAACAGATTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCAGAGACAAACTATATAACATTCGGGAACGTGCTCGCCATTTATTAGCCAATGGGACATCTGATATCCCTGAGGAGACAACCTTCACTAACGTTGAGCAGTTTCTGGAGCCCCTTGAACTATGCTACAGGTCACTCTGTGCATGTGGTGACAGACCAATAGCAGATGGAAGCCTCCTTGATTTCCTGCGGCAAGTTTCCACATTTGGACTCTCACTAGTGAGACTTGACATCCGTCAAGAGTCAGATAGGCACACTGATGTTATGGATGCAATCACAAAACACTTAGACATTGGATCATACCGAGAGTGGCCCGAGGAAAAGAGGCAGGAGTGGCTCTTGTCTGAACTCAGTGGAAAGCGCCCTCTCTTTGGCCATGACCTTCCCAAAACAGAAGAAATCACCGATGTTTTGGAAACATTCCGTGTCATTTCAGAGCTTCCCTCAGACAACTTCGGTGCCTACATCATATCAATGGCAACATCCCCATCTGATGTGCTTGCTGTTGAGCTTTTACAACGTGAATGCCATGTGAAGCAGCCACTAAGGGTGGTGCCACTGTTTGAAAAGCTTGCTGATCTTGAGGCCGCTCCGGCTGCGGTGGCACGTCTTTTCTCTATAGATTGGTACAGAAACCGCATTGATGGGAAGCAAGAAGTTATGATAGGGTACTCAGACTCAGGAAAAGATGCAGGCCGTCTTTCTGCGGCTTGGGCGCTTTACAAGGCTCAAGAAGAACTTGTGAAGGTTGCTAAGGAGTATGGTGTTAAACTTACAATGTTTCATGGGAGAGGAGGGACTGTTGGAAGAGGAGGAGGTCCAACTCATCTTGCTATATTGTCTCAGCCACCAGACACCATTCATGGCTCACTTCGGGTAACGGTTCAGGGTGAAGTCATTGAGCAGTCTTTTGGAGAGGAACACTTGTGCTTTAGAACACTTCAGCGCTTCACTGCAGCTACACTTGAGCATGGCATGCATCCTCCTGTGTCACCGAAACCCGAATGGCGTGCCCTCATGGATGAAATGGCTGTCATTGCAACAAAGGAGTATCGCTCTGTTGTTTTCAAAGAACCTCGTTTTGTTGAATATTTCAGATGTGCAACTCCTGAGTTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCATCAAAGCGAAAGCCAAGTGGAGGAATTGAATCACTACGTGCTATTCCTTGGATTTTTGCATGGACACAAACGAGGTTTCATTTGCCAGTGTGGCTTGGTTTTGGGTCAGCATTTAAGCATGTAGTTGAGAAAGATCCGAAGAATCTCCAAATGCTTCAGGACATGTACAATCAATGGCCTTTCTTCAGGGTCACCCTGGACTTGGTTGAGATGGTGTTTGCTAAGGGAGACCCGGGGATTGCAGCCCTATTTGACAAACTCCTAGTATCAGAAGAGCTGCGTCCATTTGGAGAAAATTTAAGAGCTAAATACGAAGAAACCAAGAGCTTTCTCCTCCAGGTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGACTTCGTCTTCGTGACTCATACATCACAACCCTCAATGTGTTGCAAGCTTACACATTGAAGCGAATTCGTGATCCTGACTACCATGTGAAGTTGAGGCCACACTTGTCAAAGGACTACATGGAATCAAGCAAGCCAGCAGCAGAGCTTGTTAAACTTAACCCCAAAAGCGAGTATGCTCCTGGTCTTGAGGACACCCTTATTTTGACAATGAAGGGTATTGCTGCTGGAATGCAAAATACCGGTTAA
>Glyma.12g210600.1.p sequence-type=predicted peptide transcript=Glyma.12g210600.1 locus=Glyma.12g210600 ID=Glyma.12g210600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAARNIEKMASIDAQLRLLAPRKVSDDDKLVEYDALLLDRFLDILQDLHGEDIRQTVQDCYELSAEYEGEHKPEKLEELGNMLTGLDAGDSIVIAKSFSHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSAITESDIEETFKKLVAQLKKTPQEIFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPQFLRRVDTALKNIGINERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEDLMFELSMWRCTDELRVRAHELHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNIRERARHLLANGTSDIPEETTFTNVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLDIGSYREWPEEKRQEWLLSELSGKRPLFGHDLPKTEEITDVLETFRVISELPSDNFGAYIISMATSPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAVARLFSIDWYRNRIDGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELVKVAKEYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSVVFKEPRFVEYFRCATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGSAFKHVVEKDPKNLQMLQDMYNQWPFFRVTLDLVEMVFAKGDPGIAALFDKLLVSEELRPFGENLRAKYEETKSFLLQVAGHKDILEGDPYLKQRLRLRDSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKDYMESSKPAAELVKLNPKSEYAPGLEDTLILTMKGIAAGMQNTG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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