Glyma.12G208400

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Report for Sequence Feature Glyma.12G208400

Feature Type:	gene_model
Chromosome:	Gm12
Start:	36772916
stop:	36777452
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.12G208400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58120.1	AT	Basic-leucine zipper (bZIP) transcription factor family protein	JGI	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	JGI	N/A	IEA
GO:0045893	GO-bp	positive regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	JGI	N/A	IEA
GO:0000977	GO-mf	RNA polymerase II regulatory region sequence-specific DNA binding	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	JGI	N/A	IEA
GO:0003700	GO-mf	DNA binding transcription factor activity	EnsemblGenomes	N/A	IEA
GO:0003700	GO-mf	sequence-specific DNA binding transcription factor activity	JGI	N/A	IEA
GO:0043565	GO-mf	sequence-specific DNA binding	JGI	N/A	IEA
PTHR13301	Panther	X-BOX TRANSCRIPTION FACTOR-RELATED	JGI	N/A	IEA
PTHR13301:SF29	Panther	X-BOX-BINDING PROTEIN 1	JGI	N/A	IEA
PF07716	PFAM	Basic region leucine zipper	JGI	N/A	IEA

Proteins Associated with Glyma.12G208400

Locus	Gene Symbol	Protein Name
	BZIP58	transcription factor bZIP58
	bZIP105	Basic leucine zipper transcription factor-like protein gene 105

Expression Patterns of Glyma.12G208400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.12G208400

Paralog	Evidence	Comments
Glyma.13g292800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12G208400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g208400	Wm82.a4.v1	ISS	As supplied by JGI
Glyma12g33600	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.12G208400

Limit To All Plant Sequences

>Glyma.12g208400.1 sequence-type=CDS polypeptide=Glyma.12g208400.1.p locus=Glyma.12g208400 ID=Glyma.12g208400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGCAATTACCTCCAAAGATCCCAAACATGTCACCAAGTTGGCCAGATTTCTCTTCACACCAACAGAAGATGCAATTGCCACCTCTTAATAACAACGGCACCATCACCAACAACTATCATCAGCACAATCAGAACCCTTCTTGGGTGGATGAGTTTCTCGACTTCTCCTCGGCCCGGCGCGGCGTTCACCGGCGGTCGGTGAGCGATTCCATCACCTACTTGGATTCACCAGTGAAGTGTGGAGGGAATAAAAACAACAACAACAATGAGAACGAGTTTGACAAGTTTGATGATGAACAATTCATGTCCATGTTCACGGATGAAGTAGTGCTCTCTGGGGTCCCCTTGCCACCACCAACCACCTTGTCCTCCTCTAACCCTTCAAGCCCTTACGATCAGAACTTCATCAATGATGAGAAGGAGAAGAAGGAGGAGGAAGAGGAGCACCACCACCACCACCAATTGAAAAATGAAGCAGATGAGGTTGAAAGCCAATGCAAACAGGAAATTATGCAGCTTCCAAATGACACCAATACTTGTTCTTCCAGCGAGAGAATTACTGACCCCAAGAGAGTCAAAAGAATCTTGGCTAATAGACAATCTGCACAAAGATCGCGAGTGAGGAAGCTGCAATACATATCAGAGCTTGAGCGAAGTGTAACTTCATTACAGGCCGAAGTTTCAGTGCTGTCTCCAAGGGTTGCATTTTTAGATCATCAACGATTGCTTCTAAATGTCGACAACAGTGCTCTCAAGCAAAGAATCGCTGCCCTTGCTCAAGACAAGATCTTTAAAGATGCTCATCAAGAGGCACTGAAGAGGGAGATAGAGAGACTTAGGCAAGTTTATTACCAACAAAGCCTCAAGAAGATGGAAAATGCTGCTGGGTCACCATTACCATCACCAAAGCCTATATGTGATGCTCAAACAGAAAAGGAAGCACAACTTCTCAACGCTTGA

Predicted protein sequences of Glyma.12G208400

Limit To All Plant Sequences

>Glyma.12g208400.1.p sequence-type=predicted peptide transcript=Glyma.12g208400.1 locus=Glyma.12g208400 ID=Glyma.12g208400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAQLPPKIPNMSPSWPDFSSHQQKMQLPPLNNNGTITNNYHQHNQNPSWVDEFLDFSSARRGVHRRSVSDSITYLDSPVKCGGNKNNNNNENEFDKFDDEQFMSMFTDEVVLSGVPLPPPTTLSSSNPSSPYDQNFINDEKEKKEEEEEHHHHHQLKNEADEVESQCKQEIMQLPNDTNTCSSSERITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYYQQSLKKMENAAGSPLPSPKPICDAQTEKEAQLLNA*

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