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Report for Sequence Feature Glyma.12G098700

Feature Type:gene_model
Chromosome:Gm12
Start:8511561
stop:8522153
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12G098700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G32415.1AT Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain JGI N/AIEA
GO:0006139GO-bp nucleobase-containing compound metabolic process EnsemblGenomesN/AIEA
GO:0006139GO-bp nucleobase-containing compound metabolic process JGI N/AIEA
GO:0044237GO-bp cellular metabolic process EnsemblGenomesN/AIEA
GO:0090305GO-bp nucleic acid phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0008408GO-mf 3'-5' exonuclease activity EnsemblGenomesN/AIEA
GO:0008408GO-mf 3'-5' exonuclease activity JGI N/AIEA
PTHR12124Panther POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED JGI N/AIEA
PTHR12124:SF2Panther JGI N/AIEA
PF00570PFAM HRDC domain JGI N/AIEA
PF01612PFAM 3'-5' exonuclease JGI N/AIEA

Expression Patterns of Glyma.12G098700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12G098700 not represented in the dataset
Glyma.12G098700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12G098700
ParalogEvidenceComments
Glyma.06g305900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12G098700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma12g10530 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.12G098700
>Glyma.12g098700.1 sequence-type=CDS polypeptide=Glyma.12g098700.1.p locus=Glyma.12g098700 ID=Glyma.12g098700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCAACGCTCACAAGATGCGCGTGGCATTCACCGTCGTCACATTCACCGCCGCAGCCGCCGCTGAGTTTAGGGGTTTTCTTACAGAGAATGCTTTGAATTCGCATCCATATGAGGCAGAGATTACGGCATTGTTGAAAAATCCTCTGCCTAAAATTGAGCTTGGAACTGAGATCGCAGACTTGGAAATGAAGGATTCCTATGTTTGGGTTCATACCGAGTTAAATGAACTAATTGATGTTTTGAGCGAAGAGAGGTTCTTTGCTGTGGACACGGAACAACATAGCTTACGATCTTTTTTAGGCTTTACAACATTGGTTCAGATTTCTACACGGGAGAAAGATTATTTGGTTGATACAATTGCCCTGCATGATTTTATGGGCATTCTTCGCCCAGTTTTTGCCAATCCTTCAATTTGTAAAGTGTTCCATGGGGCTGACAATGATATAGTCTGGCTACAGAGGGACTTCCATATATACGTTGCATGTGAGGTGATGTCAAAACCACAGAAATCACTTGCTTATTTGCTTGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAGCGTGAAGACTGGAGGCAGCGCCCTCTCTCAGCAGAAATGGTACATTATGCACAAACAGATGCACACTATCTATTGTATATTGCAAACTGTCTGATCAATGAACTCAAACAACTGGACAATGAAAACTCTTCTTCCGATGACAAATTCCATTTTGTTCTTGAGGCTAGTCGGCGTTCAAACGTGATTTTAAGCAGTCATGGCTTTCCATCAATTTCAAATGAATCCCAGGTTTGCTGCTTCTTAATGCAGATTCAGAATATTTTGAGGCAACTGTGCTCGTGGAGAGATCTGATGGCTCGTATTCATGATGAGAGCTTAAAATATGTACTGTCAGATCAGGCAATTGTTGCTTTGGCAAGTCAGCCTTCAGTGAGTCACTCTGAAATATACAGCACCATAGCTCAGGCTGATATCAATATGGAAATGGGTGTCAACTCTCTCATCCCTTCCCTGTCTCCTGTAATTTGCAGTCACCTTAGTGATATCTATCATCTGCTTGCAAACAAGTTGGATAACGATGATGATATTTATTCAGTGATTCTACAGAAGTGCCTAGGTCAAAATGGGAGCTGCCCACTTTCTATATTTAATTATGCTTTGTTGGTAAACAGTAACCTAAGACCTACTTTAGCCTATAAACAACCAGGCCCAAAAAATCCTAAACAATATTCTAGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAATTCTCTTGTAAATCTGCTGTTTATCACAATTGCCGGATATATGCTAATGATGGGAGGCTGCTTTGTTATTGTGATCGGAGGAAGCTTGAATGGTACCTTAATCGGGATCTTGCAAAGCTTATTGATGAGGAACCCCCAGCTATAATGCTTCTTTTTGAACCCAAAGGTCGCCCGGAGGATGAAGGCAATGATTTTTATATCCAGAGTAAGAAAAATATAACACATTTCCCTGAGCATCTGAAAAGCCATCGTTCTCATGACATTGTCCTACTTTGTGTGGATTTCCATGAAGTTGCACATGCTGCTGCAGAAAAGTATAAGAGAAAAGTAGCTGTTGAATTTGGGATTCCTCTCTACCTTCAGAGGGTAGTTCATCCAGCTGTATATCCTTTACAATTACAAACAGCTGCTATGGCTCTTCTACGCCATGGGCCAAGAATGCCTCTCAATCGCCATGAAGAACTGACTGAGATTATAAATAGATATTATGGAGGAAGGGAGATATCCGATGAAGATCTAGAAAGAGCTTTGCAAGTTGGCATGACTCCTCATGAGAGAAGACGATTCAAGAAGAAGAGAGGGTTTTCTTTTAAACATTCTATAGGGAGTACTGCTACAGTGCCAAAACAGGATAATCATGCTGGTTGCACAACCAGAATGAATGATTTGGACGTGGACACATTGAAAGTTGATGCTCATGATGGCTCATATGGAAATGAAGAAACAAGTGAAGTAGATAGAGAACTTTTTATGAGAAAAGACGATTTTGAAAACTCCACTTTAGCTTCTGATATTAAAGTTAATGGAGTTGTCTCTGCAACTCCGAACAGAAATATGATCACAGTTGAAACTACATACTACAATGGAAGCAGTGACTCTGCTGTGAATGTTGATGATAGCTGTCTAAACAGTAGGCAAGAAAATGGACTTGGTGAACATAATTCAAAACTATCACTCTTGGGACATGGACCACATGGGAAACAAGTTGTAGAAGATTTACTGAAGGAGTATGGTGAAGATGGCATCCAAGCGTTTTGTCAAAGATGGCATCCGAGCGTTTCATCAAAGAAAGAAGACACCAAGTCAACACACTCTTGA
Predicted protein sequences of Glyma.12G098700
>Glyma.12g098700.1.p sequence-type=predicted peptide transcript=Glyma.12g098700.1 locus=Glyma.12g098700 ID=Glyma.12g098700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTNAHKMRVAFTVVTFTAAAAAEFRGFLTENALNSHPYEAEITALLKNPLPKIELGTEIADLEMKDSYVWVHTELNELIDVLSEERFFAVDTEQHSLRSFLGFTTLVQISTREKDYLVDTIALHDFMGILRPVFANPSICKVFHGADNDIVWLQRDFHIYVACEVMSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYAQTDAHYLLYIANCLINELKQLDNENSSSDDKFHFVLEASRRSNVILSSHGFPSISNESQVCCFLMQIQNILRQLCSWRDLMARIHDESLKYVLSDQAIVALASQPSVSHSEIYSTIAQADINMEMGVNSLIPSLSPVICSHLSDIYHLLANKLDNDDDIYSVILQKCLGQNGSCPLSIFNYALLVNSNLRPTLAYKQPGPKNPKQYSRKASRDLFVQKFSCKSAVYHNCRIYANDGRLLCYCDRRKLEWYLNRDLAKLIDEEPPAIMLLFEPKGRPEDEGNDFYIQSKKNITHFPEHLKSHRSHDIVLLCVDFHEVAHAAAEKYKRKVAVEFGIPLYLQRVVHPAVYPLQLQTAAMALLRHGPRMPLNRHEELTEIINRYYGGREISDEDLERALQVGMTPHERRRFKKKRGFSFKHSIGSTATVPKQDNHAGCTTRMNDLDVDTLKVDAHDGSYGNEETSEVDRELFMRKDDFENSTLASDIKVNGVVSATPNRNMITVETTYYNGSSDSAVNVDDSCLNSRQENGLGEHNSKLSLLGHGPHGKQVVEDLLKEYGEDGIQAFCQRWHPSVSSKKEDTKSTHS*






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