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Report for Sequence Feature Glyma.12G081300

Feature Type:gene_model
Chromosome:Gm12
Start:6423237
stop:6427486
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.12G081300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G28190.1AT copper/zinc superoxide dismutase 2 JGI N/AIEA
GO:0006801GO-bp superoxide metabolic process EnsemblGenomesN/AIEA
GO:0006801GO-bp superoxide metabolic process JGI N/AIEA
GO:0019430GO-bp removal of superoxide radicals EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005615GO-cc extracellular space EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004784GO-mf superoxide dismutase activity EnsemblGenomesN/AIEA
GO:0005507GO-mf copper ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
KOG0441 KOG Cu2+/Zn2+ superoxide dismutase SOD1 JGI N/AIEA
PTHR10003Panther SUPEROXIDE DISMUTASE [CU-ZN]-RELATED JGI N/AIEA
PF00080PFAM Copper/zinc superoxide dismutase (SODC) JGI N/AIEA
DETOX1-PWYSoyCyc9 superoxide radicals degradation Plant Metabolic Network ISS
DETOX1-PWY-1SoyCyc9 reactive oxygen species degradation Plant Metabolic Network ISS
GN7V-59212SoyCyc9-rxn superoxide dismutase Plant Metabolic Network ISS

Expression Patterns of Glyma.12G081300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12G081300 not represented in the dataset
Glyma.12G081300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.12G081300
ParalogEvidenceComments
Glyma.11g192700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.12G081300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g081300 Wm82.a4.v1ISS As supplied by JGI
Glyma12g08650 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.12G081300
>Glyma.12g081300.2 sequence-type=transcript locus=Glyma.12g081300 ID=Glyma.12g081300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTATAAGTTTGGGTAGTTTTCTTTTCTTTTTCTCAGTGCTAGAAAAAAACTAAATTTAAGAAGCAGACAAAAAGCAAAAGGTCTAGAGTGTGGAGAGTAAGCAGTGGCTCTGTGAGTGAGTGAGGATTATATAATTTGCTTTCACCACCAACCAACCACAAATTCACACACACATATTCTTTGTTGCAATATCACAAACACCTCGTCCGTCACAATGCAGCTAGCTGTGGCGGCCAACGCTGTCGTTtcaccgtcgccgttccgacctcatccccttctccggtcatccttctccgGCGTCTCCGTTAAGCTCACTCCCCAATCCATAACGTTTTCACGCTTGAAGCCCCTCACCGTCTTCGCCGCCACCAAGAAGGCCGTCGCTGTCCTCAAGGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGGTTTTCACCTACATGAGTATGGTGATACCACAAATGGGTGTATATCAACAGGAGCACATTTTAATCCTAATAACTTGACACATGGTGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCAGAGGAGGCTACAATTGTGGATAATCAGATACCACTCTCTGGCCCTAATTCAGTAGTTGGAAGAGCCTTGGTGGTCCATGAGCTTGAGGATGACCTTGGAAAGGGTGGGCATGAACTCAGTTTGACAACTGGAAATGCTGGTGGAAGATTAGCGTGTGGTGTGGTTGGTTTGACTCCAGCATAAATAGTGAAGCAAATGTTTTTGTAGCAGTCGTGTTATTTTATCTGATGTTATGTCTTCTGTGAAGCATGATGACTCACGTTCTTACTTTCTTCAGTTACCAATGCAAACTGTAAAGCATAATGTCCTTCTAAAGATGAGTGTGCAAATGAATCGTGAAAACATGTTAGTCCTTTACTGGAGATTCATCATGCAGTCGAGTGTGTACTCCCCAATAAAATTCATCATGCGGTCAGATGTTTATTCCCCAACGAAATTGATTTGTGTAGTCCTTGTTGCCTGCTTGAGAAAGAACCTATGTTAATATTCTATATTAATTATGCAAGTGCAACAACTGGTTACTTGTGTCTAACTGTTCTTTTTCCTCACTGAGCTATGCTGCAAAGGACTCTAA
Coding sequences of Glyma.12G081300
>Glyma.12g081300.1 sequence-type=CDS polypeptide=Glyma.12g081300.1.p locus=Glyma.12g081300 ID=Glyma.12g081300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGCTAGCTGTGGCGGCCAACGCTGTCGTTTCACCGTCGCCGTTCCGACCTCATCCCCTTCTCCGGTCATCCTTCTCCGGCGTCTCCGTTAAGCTCACTCCCCAATCCATAACGTTTTCACGCTTGAAGCCCCTCACCGTCTTCGCCGCCACCAAGAAGGCCGTCGCTGTCCTCAAGGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGGTTTTCACCTACATGAGTATGGTGATACCACAAATGGGTGTATATCAACAGGAGCACATTTTAATCCTAATAACTTGACACATGGTGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCAGAGGGGGTTGCAGAGGCTACAATTGTGGATAATCAGATACCACTCTCTGGCCCTAATTCAGTAGTTGGAAGAGCCTTGGTGGTCCATGAGCTTGAGGATGACCTTGGAAAGGGTGGGCATGAACTCAGTTTGACAACTGGAAATGCTGGTGGAAGATTAGCGTGTGGTGTGGTTGGTTTGACTCCAGCATAA

>Glyma.12g081300.2 sequence-type=CDS polypeptide=Glyma.12g081300.2.p locus=Glyma.12g081300 ID=Glyma.12g081300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGCTAGCTGTGGCGGCCAACGCTGTCGTTTCACCGTCGCCGTTCCGACCTCATCCCCTTCTCCGGTCATCCTTCTCCGGCGTCTCCGTTAAGCTCACTCCCCAATCCATAACGTTTTCACGCTTGAAGCCCCTCACCGTCTTCGCCGCCACCAAGAAGGCCGTCGCTGTCCTCAAGGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGGTTTTCACCTACATGAGTATGGTGATACCACAAATGGGTGTATATCAACAGGAGCACATTTTAATCCTAATAACTTGACACATGGTGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCAGAGGAGGCTACAATTGTGGATAATCAGATACCACTCTCTGGCCCTAATTCAGTAGTTGGAAGAGCCTTGGTGGTCCATGAGCTTGAGGATGACCTTGGAAAGGGTGGGCATGAACTCAGTTTGACAACTGGAAATGCTGGTGGAAGATTAGCGTGTGGTGTGGTTGGTTTGACTCCAGCATAA
Predicted protein sequences of Glyma.12G081300
>Glyma.12g081300.1.p sequence-type=predicted peptide transcript=Glyma.12g081300.1 locus=Glyma.12g081300 ID=Glyma.12g081300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQLAVAANAVVSPSPFRPHPLLRSSFSGVSVKLTPQSITFSRLKPLTVFAATKKAVAVLKGTSAVEGVATLIQEDDGPTTVSVSITGLTPGLHGFHLHEYGDTTNGCISTGAHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPA*

>Glyma.12g081300.2.p sequence-type=predicted peptide transcript=Glyma.12g081300.2 locus=Glyma.12g081300 ID=Glyma.12g081300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQLAVAANAVVSPSPFRPHPLLRSSFSGVSVKLTPQSITFSRLKPLTVFAATKKAVAVLKGTSAVEGVATLIQEDDGPTTVSVSITGLTPGLHGFHLHEYGDTTNGCISTGAHFNPNNLTHGAPEDEVRHAGDLGNIVANAEEATIVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPA*






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