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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G17230.1 | AT | PHYTOENE SYNTHASE | JGI | N/A | IEA |
| GO:0006696 | GO-bp | ergosterol biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | JGI | N/A | IEA |
| GO:0004310 | GO-mf | farnesyl-diphosphate farnesyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | JGI | N/A | IEA |
| GO:0016765 | GO-mf | transferase activity, transferring alkyl or aryl (other than methyl) groups | EnsemblGenomes | N/A | IEA |
| GO:0051996 | GO-mf | squalene synthase activity | EnsemblGenomes | N/A | IEA |
| KOG4411 | KOG | Phytoene/squalene synthetase | JGI | N/A | IEA |
| PF00494 | PFAM | Squalene/phytoene synthase | JGI | N/A | IEA |
| CAROTENOID-PWY | SoyCyc9 | superpathway of carotenoid biosynthesis in plants | Plant Metabolic Network | ISS | |
| PWY-6475 | SoyCyc9 | trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria) | Plant Metabolic Network | ISS | |
| GN7V-47026 | SoyCyc9-rxn | phytoene synthase | Plant Metabolic Network | ISS |
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Glyma.11g256400 not represented in the dataset |
Glyma.11g256400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.18g000600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g36420 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g256400.1 sequence-type=CDS polypeptide=Glyma.11g256400.1.p locus=Glyma.11g256400 ID=Glyma.11g256400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGTTTATCATTTTGTTCACTGATGACAGCAAAGCCTTGTTCCATGATCAATACTGGGAGCAATAGGAAACCATGTTGTGGTCGTAGAAGATTTGGTGTTATAATTAGGTCGGAAGTAAATGTGGCTCCCAAACAAAGAGGAATTCTCCGATTGTCAAAACAAGGAGTTCCTCTTGCTATCATTAGTCCTTGTAGCAAGCTTAAGCCACTGTTTAAGCCCATTTTTCTTAATGATGCCTATGAAATGTGCAGAAATATTTGCGCGGAATATGCCAAGACCTTTTATCTAGGTACAAACTTGCTTATGACAGAAGAAAGACAGAAAGCTATATGTGCAATTTATGTTTGGTGCAGGAGGATGGATGGACTTGTTGATGATCCTAACGCGGTGTATATGAGCTCTGCTATTCTTGATAGGTGGGAAGATAGATTGCACGACATTTTTAATGGACAACCCTATGATATGCTTGATGCTGCTCTTACTGATATCGTCTCCAAGGACATGATACAAAACATGAGAATGGATACGAGGAAAGCCCAATACAACAATTTTCAAGAGTTATATCTTTACTGCTACTATGTGGCGGGAACTGTGGGCTTAATGACTGTTCCGATAATGGGCATTGCCCAGGAGTCTGTCATCCCAATTCAAAGTGTATATGATGTTGCACTATATCTGGGTGTAGGAAATCAACTCACAAACATTCTTAGAGATGTGGGGGAGGATGCATTAAGAGATAGAGTGTACCTTCCCCAAGACGAACTAGCCCAATTTGAATTATGTGACAAGGATGTTTTTTCAAGAAAGGTCAGTGAAAAATGGAGAAACTTTATGAAATATCAGATTTCAAGGACAAGATTCTACTTCAACCGGGCAGAAGAAGGAGTTTCTCAGCTCCAAAAAGCCAGTCGTTGGCCAGTTTGGTCATCATTAATATTGTATCGTAAGATCTTGGATGCAATTGAAGACAACGATTACGACAATTTGACTAAACGAGCCTGTGTGGGATGTGCCAAGAAATTTTTGACATTGCCCCTAACTTACACTAGATCTCTCTCAAATCCCAAAATGAAACTTGGTCCTTCTTTAACGAGGCCTATCTAG
>Glyma.11g256400.1.p sequence-type=predicted peptide transcript=Glyma.11g256400.1 locus=Glyma.11g256400 ID=Glyma.11g256400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSLSFCSLMTAKPCSMINTGSNRKPCCGRRRFGVIIRSEVNVAPKQRGILRLSKQGVPLAIISPCSKLKPLFKPIFLNDAYEMCRNICAEYAKTFYLGTNLLMTEERQKAICAIYVWCRRMDGLVDDPNAVYMSSAILDRWEDRLHDIFNGQPYDMLDAALTDIVSKDMIQNMRMDTRKAQYNNFQELYLYCYYVAGTVGLMTVPIMGIAQESVIPIQSVYDVALYLGVGNQLTNILRDVGEDALRDRVYLPQDELAQFELCDKDVFSRKVSEKWRNFMKYQISRTRFYFNRAEEGVSQLQKASRWPVWSSLILYRKILDAIEDNDYDNLTKRACVGCAKKFLTLPLTYTRSLSNPKMKLGPSLTRPI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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