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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G23820.1 | AT | UDP-D-glucuronate 4-epimerase 6 | JGI | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006694 | GO-bp | steroid biosynthetic process | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | JGI | N/A | IEA |
| GO:0044237 | GO-bp | cellular metabolic process | JGI | N/A | IEA |
| GO:0045226 | GO-bp | extracellular polysaccharide biosynthetic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0003854 | GO-mf | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | JGI | N/A | IEA |
| GO:0008831 | GO-mf | dTDP-4-dehydrorhamnose reductase activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0016616 | GO-mf | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | JGI | N/A | IEA |
| GO:0016857 | GO-mf | racemase and epimerase activity, acting on carbohydrates and derivatives | EnsemblGenomes | N/A | IEA |
| GO:0050662 | GO-mf | coenzyme binding | EnsemblGenomes | N/A | IEA |
| GO:0050662 | GO-mf | coenzyme binding | JGI | N/A | IEA |
| KOG1371 | KOG | UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase | JGI | N/A | IEA |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | N/A | IEA |
| PTHR10366:SF42 | Panther | JGI | N/A | IEA | |
| PF01370 | PFAM | NAD dependent epimerase/dehydratase family | JGI | N/A | IEA |
| PWY-4861 | SoyCyc9 | UDP-α-D-galacturonate biosynthesis I (from UDP-D-glucuronate) | Plant Metabolic Network | ISS | |
| GN7V-62832 | SoyCyc9-rxn | UDP-glucuronate 4-epimerase | Plant Metabolic Network | ISS |
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Glyma.11g254900 not represented in the dataset |
Glyma.11g254900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.18g002200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g36600 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g254900.1 sequence-type=CDS polypeptide=Glyma.11g254900.1.p locus=Glyma.11g254900 ID=Glyma.11g254900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTGTGTATTTCCTTTGGGCTTGAAACTCAAAACTATAATAATGGGTTCTTCTTCTCCTCCGGACACTAGCAAGAGCATAAAGCTAGAGCGATACAACAGCTACATCAGGAGACTCAACAGCACCAAACTCCTCAACGCCTCCTCCAAACTCCTCTTCCGTGCCACTATCTTAGTCGCACTCATCCTCGTCTTCCTCTTCACCTTCAACTACCCTCCCCTCGCCCCAGACTTCACCTCCCACCGCCACCTCCACTCCCACTCCCACTTCCTCTCCTCCTCCTCCTCCTTCGCCTCCTGGGAGAAGCAGGTCCGCCACTCCTCCACCCCTCGCCGCCCCAACGGCCTCACCGTCCTCGTCACCGGCGCCGCTGGCTTCGTCGGCAGCCACTGCTCCCTTGCCCTCAAAAAACGCGGCGACGGCGTTCTCGGGCTCGACAACTTCAACAGCTACTACGATCCCTCCCTGAAACGCTCCCGTCAGGCAATGCTCTGGAAACACCAGGTTTTCATCGTGGAAGGTGACCTTAACGACACCCCCTTGCTTGAGAAGCTCTTCGACGTTGTCCCCTTCACCCACATCCTCCACCTCGCCGCTCAGGCTGGCGTCCGCTACGCCATGCAGAACCCCCAATCCTACGTCACCGCCAACATTGCTGGCTTCGTCAACCTCCTCGAGGCTGCCAAATCCGCCAATCCCCAACCCGCCATAGTCTGGGCTTCATCCAGCTCCGTCTACGGCCTCAACACCCAAAACCCTTTCTCCGAGCTCCACCGCACCGACCAACCCGCCAGCCTCTACGCCGCCACCAAGAAAGCCGGCGAGGAGATCGCCCACACCTACAACCACATCTACGGCCTCTCCCTCACCGGACTCCGCTTCTTCACCGTCTACGGCCCCTGGGGGAGACCCGACATGGCTTACTTTTTCTTCACCAAGGACATCCTCCAAGGGAAAACCATCGACGTGTACCAGACGCAGGAGGGGAAGCAGGTGGCCCGTGACTTCACCTACATCGACGACATCGTTAAAGGCTGCCTGGGAGCCCTGGACACCGCCCAGAAGAGCACCGGGAGCGGCGGCAAGAAGAAGGGCCCCGCCCAGCTCAGAGTATACAATCTGGGGAACACTTCACCGGTGCCGGTTGGGACCTTGGTGTCCATTCTGGAAGGTCTGCTAAGCACCAAGGCCAAGAAGCACGTCATTAAGATGCCATCAAACGGCGACGTTCCCTTCACACACGCCAATGTCAGCTTGGCCTACAGGGATTTCTCTTACAATCCCACCACCGATCTCGCCACCGGTCTCAGGAAGTTCGTCAAGTGGTACCTCGGTTATTACGGCCTCCAGCAAAGGCTAAAAAAGGAATATCACCTTGACAATGAATAA
>Glyma.11g254900.1.p sequence-type=predicted peptide transcript=Glyma.11g254900.1 locus=Glyma.11g254900 ID=Glyma.11g254900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MCVFPLGLKLKTIIMGSSSPPDTSKSIKLERYNSYIRRLNSTKLLNASSKLLFRATILVALILVFLFTFNYPPLAPDFTSHRHLHSHSHFLSSSSSFASWEKQVRHSSTPRRPNGLTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRSRQAMLWKHQVFIVEGDLNDTPLLEKLFDVVPFTHILHLAAQAGVRYAMQNPQSYVTANIAGFVNLLEAAKSANPQPAIVWASSSSVYGLNTQNPFSELHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYQTQEGKQVARDFTYIDDIVKGCLGALDTAQKSTGSGGKKKGPAQLRVYNLGNTSPVPVGTLVSILEGLLSTKAKKHVIKMPSNGDVPFTHANVSLAYRDFSYNPTTDLATGLRKFVKWYLGYYGLQQRLKKEYHLDNE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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