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Report for Sequence Feature Glyma.11g250800

Feature Type:gene_model
Chromosome:Gm11
Start:34252343
stop:34255201
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g250800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G11780.1AT oxidoreductase, 2OG-Fe(II) oxygenase family protein JGI N/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0035552GO-bp oxidative single-stranded DNA demethylation EnsemblGenomesN/AIEA
GO:0042245GO-bp RNA repair EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0005719GO-cc nuclear euchromatin EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0008198GO-mf ferrous iron binding EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0043734GO-mf DNA-N1-methyladenine dioxygenase activity EnsemblGenomesN/AIEA
GO:0070579GO-mf methylcytosine dioxygenase activity EnsemblGenomesN/AIEA
KOG2731 KOG DNA alkylation damage repair protein JGI N/AIEA
PTHR16557Panther ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED JGI N/AIEA

Expression Patterns of Glyma.11g250800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g250800
ParalogEvidenceComments
Glyma.18g006200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g250800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g37040 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g250800
>Glyma.11g250800.1 sequence-type=CDS polypeptide=Glyma.11g250800.1.p locus=Glyma.11g250800 ID=Glyma.11g250800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTACGGAACCGAGAATAACCGAGATGATTCGGAGCGAACGGCGTTCAGAAGAGCAGAGAAGAAGTACAAGCTCTACTACGACTACAATGCTTCTTCCAAGAACAAAAAGAAAAAACAACCTAAACCCGTGGACTTAGCGGAGGTCCTTGACTTTAGATCTATTCTAGAATGCTATCACCAAAACGCTGTGCTTCCTTCGGGTGTTATCGTTCTTCACGACAAGTTCACCTCTCCGGTTTTTGCTTTACAAAATCGCCCAGGCTTTTATTTTATTCCTGGGGCATTAAGCATAGAGAAACAATGTAGTTTGATAAGGGAGAGTTTGACTGATTTTCCGCAGCCACCTAACAGAACAAATCACAATGCCTTGTATGGTCCTATTCAGGACCTGTTCGTTGCAGCTAAGGAAGGGAAACTTTTGGTTGAAGACAACTCTCCAATTACTTCTTCTGAAACTTATGCTGATATTGATCATAGAGATGATAAGGAATGGAAGTTTACTACTGAAAAGGACATGTCGTTGAGAAAGTGCAGAACAGTTTCTGCTTCTGTGTTACTTAGAAAGTTGCGATGGAGCACCCTTGGCCTACAATTTGATTGGTCCAAGCGGAATTATGATGTATCTCTCCCACATAACAAAATCCCTGAAGCATTATGTGAGCTTTCCAAACAATTGGCAAAACCTGCTTTGCCTGGTGGTGTTGAGTTCAGACCTGATGCTGCAATAGTGAATTACTTCGGCCTAGGGGACACATTGGGTGGCCACCTTGATGACATGGAAGCAGATTGGAGCAAGCCTATTGTTAGTCTAAGTCTGGGCTGCAAAGCTATATTTCTTTTGGGAGGAAAATCCAGAGAGGATACTCCCTTGGCAATGTTCCTTCGAAGCGGTGATGCTGTACTTATGGCTGGAGATGCAAGGGAATGCTTTCATGGGGTTCCTCGGATCTTCACAGATAAAGAAAATGCTGAAATAGGCCATCTTGAGACACGGCTGACGCATGAAGATGATATTTGTTTCTTAAAATACATTCAAACATCTAGAATCAACATCAATATCAGACAAGTTTTTTGA
Predicted protein sequences of Glyma.11g250800
>Glyma.11g250800.1.p sequence-type=predicted peptide transcript=Glyma.11g250800.1 locus=Glyma.11g250800 ID=Glyma.11g250800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYGTENNRDDSERTAFRRAEKKYKLYYDYNASSKNKKKKQPKPVDLAEVLDFRSILECYHQNAVLPSGVIVLHDKFTSPVFALQNRPGFYFIPGALSIEKQCSLIRESLTDFPQPPNRTNHNALYGPIQDLFVAAKEGKLLVEDNSPITSSETYADIDHRDDKEWKFTTEKDMSLRKCRTVSASVLLRKLRWSTLGLQFDWSKRNYDVSLPHNKIPEALCELSKQLAKPALPGGVEFRPDAAIVNYFGLGDTLGGHLDDMEADWSKPIVSLSLGCKAIFLLGGKSREDTPLAMFLRSGDAVLMAGDARECFHGVPRIFTDKENAEIGHLETRLTHEDDICFLKYIQTSRININIRQVF*






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