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Report for Sequence Feature Glyma.11g250000

Feature Type:gene_model
Chromosome:Gm11
Start:34184809
stop:34185321
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g250000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G43250.1AT nuclear factor Y, subunit C13 JGI N/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
GO:0046982GO-mf protein heterodimerization activity EnsemblGenomesN/AIEA
KOG1659 KOG Class 2 transcription repressor NC2, alpha subunit (DRAP1) JGI N/AIEA
PTHR10252Panther HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED JGI N/AIEA
PF00808PFAM Histone-like transcription factor (CBF/NF-Y) and archaeal histone JGI N/AIEA

Proteins Associated with Glyma.11g250000
LocusGene SymbolProtein Name
DPB3-1 dr1-associated corepressor

Expression Patterns of Glyma.11g250000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g250000
ParalogEvidenceComments
Glyma.18g007100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g250000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g37130 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g250000
>Glyma.11g250000.1 sequence-type=CDS polypeptide=Glyma.11g250000.1.p locus=Glyma.11g250000 ID=Glyma.11g250000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTATGGCTGACGAAGAAGAAAACGGAGTATCGATCCAACTGGAATTCCCGAAGGGTCGAGTGAAGAAGATTATGGCGCTGGACAAAGACGTGAAGAGAGTGAGCTCAGAAGCGTTGTTCCTGGTGTCGCGCTCCACCGAATTATTCCTCCAATTTCTGGCTGAAAAATCGGCTCAGGTTGCAATTGAGAAGAAACGGAAGACCGTGAATCTCGAACACATAAGAGTGGCGGTGAAGAGGCACCAGCCAACCAGGGATTTTCTCCTCGATGAGCTTCCGCCGCCGTCTCAGGCCGCCAAGCCCGATAAGCCCACTCAGCCTGCGGGTCGGCCCAAATTGGATCCTGCTCCCCGTGGTACTCGCTGCATCGATCAATTCTTCCGGAAACCAGAACCTGAAAACACAGCCCAAGCCCCAGGCCAACCACCTGAAAATCCAGCTCAAGCTCAATCGCCTGAAAATCCAGACCAAGACCAAGCCCAATCACCGGTACCTGTAGATGAGTCTTAG
Predicted protein sequences of Glyma.11g250000
>Glyma.11g250000.1.p sequence-type=predicted peptide transcript=Glyma.11g250000.1 locus=Glyma.11g250000 ID=Glyma.11g250000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVMADEEENGVSIQLEFPKGRVKKIMALDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIRVAVKRHQPTRDFLLDELPPPSQAAKPDKPTQPAGRPKLDPAPRGTRCIDQFFRKPEPENTAQAPGQPPENPAQAQSPENPDQDQAQSPVPVDES*






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