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Report for Sequence Feature Glyma.11g233900

Feature Type:gene_model
Chromosome:Gm11
Start:32921203
stop:32923610
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g233900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G34930.1AT arogenate dehydrogenase JGI N/AIEA
GO:0006098GO-bp pentose-phosphate shunt JGI N/AIEA
GO:0006571GO-bp tyrosine biosynthetic process EnsemblGenomesN/AIEA
GO:0006571GO-bp tyrosine biosynthetic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0004616GO-mf phosphogluconate dehydrogenase (decarboxylating) activity JGI N/AIEA
GO:0004665GO-mf prephenate dehydrogenase (NADP+) activity EnsemblGenomesN/AIEA
GO:0004665GO-mf prephenate dehydrogenase (NADP+) activity JGI N/AIEA
GO:0008977GO-mf prephenate dehydrogenase (NAD+) activity EnsemblGenomesN/AIEA
GO:0008977GO-mf prephenate dehydrogenase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
PF02153PFAM Prephenate dehydrogenase JGI N/AIEA
PWY-3461SoyCyc9 L-tyrosine biosynthesis II Plant Metabolic Network ISS
PWY-3481SoyCyc9 superpathway of L-phenylalanine and L-tyrosine biosynthesis Plant Metabolic Network ISS
GN7V-45388SoyCyc9-rxn arogenate dehydrogenase (NADP+) Plant Metabolic Network ISS

Proteins Associated with Glyma.11g233900
LocusGene SymbolProtein Name
PDH2 prephenate dehydrogenase 2

Expression Patterns of Glyma.11g233900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g233900
ParalogEvidenceComments
Glyma.18g023100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g233900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g35760 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g233900
>Glyma.11g233900.1 sequence-type=CDS polypeptide=Glyma.11g233900.1.p locus=Glyma.11g233900 ID=Glyma.11g233900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAACCATGTCAACCTCATCCTCTTCCCAAAGCCTCAAAATTGGCATTGTTGGATTCGGCAACTTTGGCCAGTTTCTGGCCAAGACAATGATTAAACAAGGCCACACTCTCACAGCAACTTCTCGATCTGATTACTCTCAACTTTGTCTCCAAATGGGGATCCATTTTTTCAGGGATGTCAGCGCATTCCTCGCCGCAGACATAGATGTTATAGTGTTGTGCACATCGATATTATCGCTATCCGAGGTTGTAGGGTCAATGCCACTCACTTCCCTGAAGCGACCAACGCTCTTTGTTGATGTTCTTTCTGTGAAAGAGCACCCAAGAGAGCTTCTACTACGAGAGTTGCCAGAGGATTCAGACATACTCTGCACGCACCCAATGTTTGGTCCTCAGACTGCCAATAATGGATGGACAGATCACACTTTCATGTATGACAAAGTTCGGATAAGAGACGAAGCTACTTGCTCTAGTTTCATCCAAATCTTTGCTACTGAGGGTTGCAAGATGGTACAGATGTCCTGTGAGGAACATGACAGAGCGGCTGCTAAGAGCCAATTTATCACACACACAATTGGCAGGACATTGGGAGAAATGGATATTCAATCCACACCTATTGACACTAAGGGCTTTGAGACACTTGTTAAATTGAAGGAGACTATGATGAGAAATAGTTTTGATTTGTACAGTGGATTATTCGTGTATAACAGATTCGCCAGACAAGAGTTGGAAAACCTTGAACATGCCTTTTACAAAGTCAAAGAAACGCTGATGATACAAAGGTCGAATGGGGAGCAGGGTCATAAAAGAACCGAAAGTTGA
Predicted protein sequences of Glyma.11g233900
>Glyma.11g233900.1.p sequence-type=predicted peptide transcript=Glyma.11g233900.1 locus=Glyma.11g233900 ID=Glyma.11g233900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTMSTSSSSQSLKIGIVGFGNFGQFLAKTMIKQGHTLTATSRSDYSQLCLQMGIHFFRDVSAFLAADIDVIVLCTSILSLSEVVGSMPLTSLKRPTLFVDVLSVKEHPRELLLRELPEDSDILCTHPMFGPQTANNGWTDHTFMYDKVRIRDEATCSSFIQIFATEGCKMVQMSCEEHDRAAAKSQFITHTIGRTLGEMDIQSTPIDTKGFETLVKLKETMMRNSFDLYSGLFVYNRFARQELENLEHAFYKVKETLMIQRSNGEQGHKRTES*






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