Glyma.11g232600

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Report for Sequence Feature Glyma.11g232600

Feature Type:	gene_model
Chromosome:	Gm11
Start:	32791011
stop:	32794579
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.11g232600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40300.1	AT	ferritin 4	JGI	N/A	IEA
GO:0006826	GO-bp	iron ion transport	EnsemblGenomes	N/A	IEA
GO:0006879	GO-bp	cellular iron ion homeostasis	EnsemblGenomes	N/A	IEA
GO:0006879	GO-bp	cellular iron ion homeostasis	JGI	N/A	IEA
GO:0006880	GO-bp	intracellular sequestering of iron ion	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0005623	GO-cc	cell	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0009536	GO-cc	plastid	EnsemblGenomes	N/A	IEA
GO:0004322	GO-mf	ferroxidase activity	EnsemblGenomes	N/A	IEA
GO:0005506	GO-mf	iron ion binding	EnsemblGenomes	N/A	IEA
GO:0008199	GO-mf	ferric iron binding	EnsemblGenomes	N/A	IEA
GO:0008199	GO-mf	ferric iron binding	JGI	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
KOG2332	KOG	Ferritin	JGI	N/A	IEA
PTHR11431	Panther	FERRITIN	JGI	N/A	IEA
PTHR11431:SF8	Panther		JGI	N/A	IEA
PF00210	PFAM	Ferritin-like domain	JGI	N/A	IEA
GN7V-63976	SoyCyc9-rxn	ferroxidase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.11g232600

Locus	Gene Symbol	Protein Name
	SFERH-3	ferritin

Expression Patterns of Glyma.11g232600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.11g232600

Paralog	Evidence	Comments
Glyma.18g024600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g232600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma11g35610	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.11g232600

Limit To All Plant Sequences

>Glyma.11g232600.1 sequence-type=CDS polypeptide=Glyma.11g232600.1.p locus=Glyma.11g232600 ID=Glyma.11g232600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTCTCAGAACAGCTTCATCTTTCTCTCTCCTCAAAGCCAACGCCGACCATATACTCCCTCTCCCCAACTCTTCTTCTTCTGGTATTATTCGCTACTCTCAGTCTCTGGGGAAAAACTTGGTTCCATGCGCTACCAAGGACACCAACAACCGCCCCTTAACCGGCGTCGTTTTTGAACCCTTTGAAGAGGTCAAGAAGGAGCTCGACCTTGTTCCCACCGTCCCACAAGCTTCCCTCGCTCGCCAGAAATACACCGATGACTGCGAGGCTACCATAAACGAACAGATCAATGTGGAGTACAATGTTTCGTATGTTTATCATGCGATGTTTGCCTACTTCGATAGGGACAATGTCGCGCTCAAGGGTCTTGCCAAGTTTTTCAAGGAGTCAAGCGAGGAGGAAAGGGAGCATGCTGAGAAATTAATGGAATATCAAAACAAACGAGGTGGAAAAGTGAAGTTGCAATCCATAGTGATGCCTCTTTCTGAGTTTGACCATGAGGAAAAGGGAGATGCCCTGTATGCAATGGAACTTGCTCTGTCGTTGGAGAAGCTAACCAATGAAAAATTACTTAACTTGCACAGTGTTGCCTCAAAGAACAATGATGTGCAATTGGCAGATTTTATTGAAAGCGAGTTTTTGGGTGAACAGGTGGAAGCCATAAAAAAAATCTCTGAGTACGTTGCTCAGCTCAGAAGAGTTGGTAAAGGACATGGTGTGTGGCACTTTGATCAGATGCTGCTGCATGAGGAGGGCGTTGCTGCTTGA

Predicted protein sequences of Glyma.11g232600

Limit To All Plant Sequences

>Glyma.11g232600.1.p sequence-type=predicted peptide transcript=Glyma.11g232600.1 locus=Glyma.11g232600 ID=Glyma.11g232600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLRTASSFSLLKANADHILPLPNSSSSGIIRYSQSLGKNLVPCATKDTNNRPLTGVVFEPFEEVKKELDLVPTVPQASLARQKYTDDCEATINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSEFDHEEKGDALYAMELALSLEKLTNEKLLNLHSVASKNNDVQLADFIESEFLGEQVEAIKKISEYVAQLRRVGKGHGVWHFDQMLLHEEGVAA*

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