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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05700.1 | AT | arginine-tRNA protein transferase 1 | JGI | N/A | IEA |
| GO:0006420 | GO-bp | arginyl-tRNA aminoacylation | EnsemblGenomes | N/A | IEA |
| GO:0016598 | GO-bp | protein arginylation | EnsemblGenomes | N/A | IEA |
| GO:0016598 | GO-bp | protein arginylation | JGI | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0004057 | GO-mf | arginyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0004057 | GO-mf | arginyltransferase activity | JGI | N/A | IEA |
| GO:0004814 | GO-mf | arginine-tRNA ligase activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016746 | GO-mf | transferase activity, transferring acyl groups | EnsemblGenomes | N/A | IEA |
| KOG1193 | KOG | Arginyl-tRNA-protein transferase | JGI | N/A | IEA |
| PTHR21367 | Panther | ARGININE-TRNA-PROTEIN TRANSFERASE 1 | JGI | N/A | IEA |
| PF04376 | PFAM | Arginine-tRNA-protein transferase, N terminus | JGI | N/A | IEA |
| PF04377 | PFAM | Arginine-tRNA-protein transferase, C terminus | JGI | N/A | IEA |
| GN7V-67802 | SoyCyc9-rxn | arginyl-tRNA--protein transferase | Plant Metabolic Network | ISS |
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Glyma.11g228500 not represented in the dataset |
Glyma.11g228500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.18g028600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g35100 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g228500.1 sequence-type=CDS polypeptide=Glyma.11g228500.1.p locus=Glyma.11g228500 ID=Glyma.11g228500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCCCCCAAAACCCAAGAAGAAATGGCGAGTAGCAGCAGCAACACTCCGAAGGAAAGCGTGGTTGACGATCGGGGAAGGCGTCGAACCTCTTGTGGCTATTGCAGATCCTCTCGTGACAATAGCATCTCTCATGGCATGTGGGCACATAGCCTTACAGTGGATGACTACCAAGATCTTCTTGATTGTGGCTGGAGAAGGTCTGGATGTTTTCTTTATAAACCAGAGATGGAAAGGACATGCTGCCCTTCTTATACAATTCGCTTGAAAGCAAGTAACTTTGTTCCTTCTAAGGAGCAACTTCGTGTATCTATACGAATGCAAAGGTTTTTAGATGGAACCTTGGATGTAAAAAAAGTCGATGTCACGGAGGACCCAACCAAATCAGGAAACTTCTCCAGTCCTATGTCAGAAGAATCCTTAGCTGCTGGCAGTGAAAACAAGGATGAAGTTGAAAAATCTTTGCATTTATCAAACCAAATTGATAATGTAATACACATCCTCATTGAGAGGGGGGAATTTGCCTCTGGTATTCAATTACCAAAAGCTTCAGTGAAAAGAGTTTCACAGGGAAAAAGGAAGTTACTAGTCAATGGATCAGAAGATCTCTTATATAGTAGCAATATAGCCTTTCAAATTGCAGCATCTATAAAACGAGCACAATCATGTGACAAGGTTGTCAATGATTCCAAACCATCAAGAGTTTGTGAAAAGGAGAATGATTCATCTCCTAAAATTATTGCAGAAAAGCTAGTAGCTTCTTTAGATCCAACTGTGAAAAATTCTGGTTTGTCTATCAGGGCTTGCAATGGACATATCAATTTTTATGCTTCTAGTAAGCAAGTTTCCTTGAACAGAAGTGTTCAAAATGCTCCAGTTCCTAAAAATTCTAGAATGAAGCATTACAGTGGAGGAAATTGTTTGATTGGTCAGGTAAAAAGGCGAAAGCTTGAGATCCGTTTAAACAGATCCAGTTTTGATCCAGAAGAATTTGCTTTGTACAGAAGATATCAGCTCAAAGTACATAATGATAAACCACAAAATGTCACAGAGAACTCATATCGCAGTTTTTTGGTTGATACTCCATTAATACAAGTTTCTCCTACTGGTGGTAGCACAGTTCCTCCTTGTGGTTTTGGCTCTTTCCATCAACAATATCTAATAGATGGCCAGTTAGTGGCAGTTGGTGTTATAGATATCCTTCCCAAATGTTTGTCAAGTAAATATTTGTTCTGGGATCCAGACTTTGCCTATCTATCACTAGGCAAGTACTCAGCTTTTCAAGAAATAGGTTGGGTGAAAGAAAACCAGGTTTATTGTCCTAGTCTACAATACTATTATCTTGGCTATTATATTCACTCTTGCAACAAGATGAGATACAAAGCTGCATATCACCCTTCAGAGCTTTTATGCCCTCTTCGCTATCAGTGGGTTCCATTTGACATTGCAAGGCCTCTGCTTGACAGAAAACCTTATGTTGTCTTATCAGATTCTTCCATTTTACAAAATGGAGAGTCATCCCTACCTCAAATTACTGACGATGTAATGGGAAGGGATTTTGATGATGTTGGCCAAGAAGATGCAAATGATGTTCCAATGCTTGATGAAGAAGAAATGGTTGATTCTGAATCTGAATGCTCTGATGATGAACCTGACCTAGAAACCACTTCAGATGATGATCCAGAAATTGTTGATGTCAGCAAGGTTTTGCTAGGGATAAAGGGATCTCATGTGAAATACAAGGATCTGTGGGTTGTCTTTGATCCTGAGCAGCGGAGTTACTTGGAGTCACGATTGCGGAGATACAGGAAGGTTGTGGGTCCAGCGCTATCCGAGAGAATGGTCCATTCGCTCGGATAA
>Glyma.11g228500.1.p sequence-type=predicted peptide transcript=Glyma.11g228500.1 locus=Glyma.11g228500 ID=Glyma.11g228500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPPKTQEEMASSSSNTPKESVVDDRGRRRTSCGYCRSSRDNSISHGMWAHSLTVDDYQDLLDCGWRRSGCFLYKPEMERTCCPSYTIRLKASNFVPSKEQLRVSIRMQRFLDGTLDVKKVDVTEDPTKSGNFSSPMSEESLAAGSENKDEVEKSLHLSNQIDNVIHILIERGEFASGIQLPKASVKRVSQGKRKLLVNGSEDLLYSSNIAFQIAASIKRAQSCDKVVNDSKPSRVCEKENDSSPKIIAEKLVASLDPTVKNSGLSIRACNGHINFYASSKQVSLNRSVQNAPVPKNSRMKHYSGGNCLIGQVKRRKLEIRLNRSSFDPEEFALYRRYQLKVHNDKPQNVTENSYRSFLVDTPLIQVSPTGGSTVPPCGFGSFHQQYLIDGQLVAVGVIDILPKCLSSKYLFWDPDFAYLSLGKYSAFQEIGWVKENQVYCPSLQYYYLGYYIHSCNKMRYKAAYHPSELLCPLRYQWVPFDIARPLLDRKPYVVLSDSSILQNGESSLPQITDDVMGRDFDDVGQEDANDVPMLDEEEMVDSESECSDDEPDLETTSDDDPEIVDVSKVLLGIKGSHVKYKDLWVVFDPEQRSYLESRLRRYRKVVGPALSERMVHSLG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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