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Report for Sequence Feature Glyma.11g221000

Feature Type:gene_model
Chromosome:Gm11
Start:31621224
stop:31624882
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g221000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39730.3AT rubisco activase JGI N/AIEA
GO:0043085GO-bp positive regulation of catalytic activity EnsemblGenomesN/AIEA
GO:0009570GO-cc chloroplast stroma EnsemblGenomesN/AIEA
GO:0009579GO-cc thylakoid EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0046863GO-mf ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity EnsemblGenomesN/AIEA
KOG0651 KOG 26S proteasome regulatory complex, ATPase RPT4 JGI N/AIEA
PTHR11603Panther AAA FAMILY ATPASE JGI N/AIEA
PTHR11603:SF153Panther JGI N/AIEA
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI N/AIEA

Proteins Associated with Glyma.11g221000
LocusGene SymbolProtein Name
RCA11 ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like

Expression Patterns of Glyma.11g221000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g221000
ParalogEvidenceComments
Glyma.18g036400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g221000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g34230 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.11g221000
>Glyma.11g221000.2 sequence-type=transcript locus=Glyma.11g221000 ID=Glyma.11g221000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATAAGTCACAGCCTCATTCATGGTCACAAGCCACTTAGCACTGAGTCTTGCAATTGAAGTTGAAGTCTTGCCCTTCTCTCTTCAACTCCAAACACAAGACATCATCATCCATGGCTGCCTCCGTCTCCACTGTCGGAGCTGTCAACAGAGCTCTTTTGAACCTGAATGGGTCTGGACCTGGGGTTTCAGCTCCCAGTTCATCCTTCTTTGGGAGCAGCTTGAAGAAGGTTATTGGCTCAAGGGTCCCCAACACAAAGATTTCCTCTGGAAGCTTCAAGATTGTTGCTGTAGAAGAGAAGAAAGAGATTGAAGAGACCCAGCAGACCGACAAGGACAGATGGAAGGGTCTTGCCTATGATATCTCAGACGACCAACAGGACATCACAAGAGGAAAGGGTTTGGTTGACTCCCTTTTCCAAGCTCCACAGGATGCTGGAACTCACTATGCTGTCATGAGCTCCTACGAGTACCTTAGCACTGGACTTCGCCAGTACTTGGACAACAACATGGATGGATTTTACATTGCTCCAGCTTTTATGGACAAACTTGTTGTTCACATTACCAAGAACTTCATGACCCTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAGGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGTTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAACTGATCAGGCAGAGATACCGTGAAGCCGCAGACTTGATCAAGAAGGGAAAGATGTGTGCTCTCTTCATCAACGATCTTGATGCAGGAGCTGGTCGTCTTGGTGGAACCACCCAATACACTGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGATAACCCCACCAATGTGCAGCTTCCTGGTATGTATAACAAGGAAGAGAATCCCCGTGTGCCCATCATCGTCACCGGTAACGATTTCTCCACACTCTATGCGCCTCTCATCCGTGATGGGCGTATGGAGAAGTTCTACTGGGCACCAACAAGGGATGACCGCATTGGTGTCTGCACTGGAATTTTTCGCACCGATTCAATTCCTGAACAGGACGTTGTCAAGATTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTGAGGGCCAGAGTATATGATGACGAAGTGAGGAAGTGGATTTCTGGTGTTGGTGTTGACGGCATTGGGAAGAAGCTTGTGAACTCAAAAGATGGACCTCCAACCTTTGAGCAGCCCAAGATGACTCTGGAGAAGCTCTTGACGTATGGTAACATGCTTGTCCAAGAACAAGAGAATGTCAAGAGAGTCCAATTGGCTGACAAGTACTTGAACGAGGCTGCACTTGGAAATGCTAACGAGGATGCTATTAACAGGGGAACTTTCTTCCAATCTTGAATTGGAGGCAAAGCAAACTTGGCAAGTAAATATTTCTGTTCCTGAAGGTTGTGCTGATCCAAGTGCTAGAAGTTGTGATGGGACTTGCGTGTAACATTCTTAGAATTCTCAATGTCTTAGGTGCAAAGAGAAGATGCCAAGTTTGAGATGATTTTACTATATTTTTCATATTGGACTGTCTTCCTCTATAATTTTGAGTTAAAGTGTCCACTTAAATTGAATTTGGTGCCTTTTCCTTTTGTCCTAAATTCTTGATTTTTTATGCTTTAAATTTATATCTTTTGTTTGACGTACAAA
Coding sequences of Glyma.11g221000
>Glyma.11g221000.1 sequence-type=CDS polypeptide=Glyma.11g221000.1.p locus=Glyma.11g221000 ID=Glyma.11g221000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCCTCCGTCTCCACTGTCGGAGCTGTCAACAGAGCTCTTTTGAACCTGAATGGGTCTGGACCTGGGGTTTCAGCTCCCAGTTCATCCTTCTTTGGGAGCAGCTTGAAGAAGGTTATTGGCTCAAGGGTCCCCAACACAAAGATTTCCTCTGGAAGCTTCAAGATTGTTGCTGTAGAAGAGAAGAAAGAGATTGAAGAGACCCAGCAGACCGACAAGGACAGATGGAAGGGTCTTGCCTATGATATCTCAGACGACCAACAGGACATCACAAGAGGAAAGGGTTTGGTTGACTCCCTTTTCCAAGCTCCACAGGATGCTGGAACTCACTATGCTGTCATGAGCTCCTACGAGTACCTTAGCACTGGACTTCGCCAGTACTTGGACAACAACATGGATGGATTTTACATTGCTCCAGCTTTTATGGACAAACTTGTTGTTCACATTACCAAGAACTTCATGACCCTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAGGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGTTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAACTGATCAGGCAGAGATACCGTGAAGCCGCAGACTTGATCAAGAAGGGAAAGATGTGTGCTCTCTTCATCAACGATCTTGATGCAGGAGCTGGTCGTCTTGGTGGAACCACCCAATACACTGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGATAACCCCACCAATGTGCAGCTTCCTGGTATGTATAACAAGGAAGAGAATCCCCGTGTGCCCATCATCGTCACCGGTAACGATTTCTCCACACTCTATGCGCCTCTCATCCGTGATGGGCGTATGGAGAAGTTCTACTGGGCACCAACAAGGGATGACCGCATTGGTGTCTGCACTGGAATTTTTCGCACCGATTCAATTCCTGAACAGGACGTTGTCAAGATTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTGAGGGCCAGAGTATATGATGACGAAGTGAGGAAGTGGATTTCTGGTGTTGGTGTTGACGGCATTGGGAAGAAGCTTGTGAACTCAAAAGATGGACCTCCAACCTTTGAGCAGCCCAAGATGACTCTGGAGAAGCTCTTGACGTATGGTAACATGCTTGTCCAAGAACAAGAGAATGTCAAGAGAGTCCAATTGGCTGACAAGTACTTGAACGAGGCTGCACTTGGAAATGCTAACGAGGATGCTATTAACAGGGGAACTTTCTTCCAATCTTGA

>Glyma.11g221000.2 sequence-type=CDS polypeptide=Glyma.11g221000.2.p locus=Glyma.11g221000 ID=Glyma.11g221000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCCTCCGTCTCCACTGTCGGAGCTGTCAACAGAGCTCTTTTGAACCTGAATGGGTCTGGACCTGGGGTTTCAGCTCCCAGTTCATCCTTCTTTGGGAGCAGCTTGAAGAAGGTTATTGGCTCAAGGGTCCCCAACACAAAGATTTCCTCTGGAAGCTTCAAGATTGTTGCTGTAGAAGAGAAGAAAGAGATTGAAGAGACCCAGCAGACCGACAAGGACAGATGGAAGGGTCTTGCCTATGATATCTCAGACGACCAACAGGACATCACAAGAGGAAAGGGTTTGGTTGACTCCCTTTTCCAAGCTCCACAGGATGCTGGAACTCACTATGCTGTCATGAGCTCCTACGAGTACCTTAGCACTGGACTTCGCCAGTACTTGGACAACAACATGGATGGATTTTACATTGCTCCAGCTTTTATGGACAAACTTGTTGTTCACATTACCAAGAACTTCATGACCCTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAGGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGTTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAACTGATCAGGCAGAGATACCGTGAAGCCGCAGACTTGATCAAGAAGGGAAAGATGTGTGCTCTCTTCATCAACGATCTTGATGCAGGAGCTGGTCGTCTTGGTGGAACCACCCAATACACTGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGATAACCCCACCAATGTGCAGCTTCCTGGTATGTATAACAAGGAAGAGAATCCCCGTGTGCCCATCATCGTCACCGGTAACGATTTCTCCACACTCTATGCGCCTCTCATCCGTGATGGGCGTATGGAGAAGTTCTACTGGGCACCAACAAGGGATGACCGCATTGGTGTCTGCACTGGAATTTTTCGCACCGATTCAATTCCTGAACAGGACGTTGTCAAGATTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTGAGGGCCAGAGTATATGATGACGAAGTGAGGAAGTGGATTTCTGGTGTTGGTGTTGACGGCATTGGGAAGAAGCTTGTGAACTCAAAAGATGGACCTCCAACCTTTGAGCAGCCCAAGATGACTCTGGAGAAGCTCTTGACGTATGGTAACATGCTTGTCCAAGAACAAGAGAATGTCAAGAGAGTCCAATTGGCTGACAAGTACTTGAACGAGGCTGCACTTGGAAATGCTAACGAGGATGCTATTAACAGGGGAACTTTCTTCCAATCTTGA
Predicted protein sequences of Glyma.11g221000
>Glyma.11g221000.1.p sequence-type=predicted peptide transcript=Glyma.11g221000.1 locus=Glyma.11g221000 ID=Glyma.11g221000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAASVSTVGAVNRALLNLNGSGPGVSAPSSSFFGSSLKKVIGSRVPNTKISSGSFKIVAVEEKKEIEETQQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPQDAGTHYAVMSSYEYLSTGLRQYLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGIFRTDSIPEQDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDGIGKKLVNSKDGPPTFEQPKMTLEKLLTYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAINRGTFFQS*

>Glyma.11g221000.2.p sequence-type=predicted peptide transcript=Glyma.11g221000.2 locus=Glyma.11g221000 ID=Glyma.11g221000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAASVSTVGAVNRALLNLNGSGPGVSAPSSSFFGSSLKKVIGSRVPNTKISSGSFKIVAVEEKKEIEETQQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPQDAGTHYAVMSSYEYLSTGLRQYLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGIFRTDSIPEQDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDGIGKKLVNSKDGPPTFEQPKMTLEKLLTYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAINRGTFFQS*






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