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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G62950.1 | AT | RNA polymerase II, Rpb4, core protein | JGI | N/A | IEA |
| AT5G62950.2 | AT | RNA polymerase II, Rpb4, core protein | JGI | N/A | IEA |
| GO:0006265 | GO-bp | DNA topological change | EnsemblGenomes | N/A | IEA |
| GO:0006351 | GO-bp | transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0006351 | GO-bp | transcription, DNA-templated | JGI | N/A | IEA |
| GO:0006352 | GO-bp | DNA-templated transcription, initiation | EnsemblGenomes | N/A | IEA |
| GO:0006384 | GO-bp | transcription initiation from RNA polymerase III promoter | EnsemblGenomes | N/A | IEA |
| GO:0044237 | GO-bp | cellular metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005666 | GO-cc | DNA-directed RNA polymerase III complex | EnsemblGenomes | N/A | IEA |
| GO:0030880 | GO-cc | RNA polymerase complex | EnsemblGenomes | N/A | IEA |
| GO:0055029 | GO-cc | nuclear DNA-directed RNA polymerase complex | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0001056 | GO-mf | RNA polymerase III activity | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003899 | GO-mf | DNA-directed 5'-3' RNA polymerase activity | EnsemblGenomes | N/A | IEA |
| GO:0003899 | GO-mf | DNA-directed RNA polymerase activity | JGI | N/A | IEA |
| GO:0003918 | GO-mf | DNA topoisomerase type II (ATP-hydrolyzing) activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| KOG4168 | KOG | Predicted RNA polymerase III subunit C17 | JGI | N/A | IEA |
| PTHR15561 | Panther | CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN | JGI | N/A | IEA |
| PF03874 | PFAM | RNA polymerase Rpb4 | JGI | N/A | IEA |
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Glyma.11g217000 not represented in the dataset |
Glyma.11g217000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.18g039600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g33771 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g217000.2 sequence-type=transcript locus=Glyma.11g217000 ID=Glyma.11g217000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 GGTTCCTACCCTGATAAAAATTGAAAATTGAAATAGTGACTTTACCTTTCTCTCTGCTACGTCGTTCACCGCGAGTTCACGGCCGCACTATTTCCTTCAGCAGCCTTTCTCTCCGGCACCGTTGTTCACCACGACCTAGTCTGACAAGCTTTTCTCTCTGAAGCAAAGGAGACACTCTCTTGTGTTGTTACTGCCTTTTCTCTCACTGTTGTGTTACAAATGAAAATCTTAGAGGGCAATGCTGGTGCACTCACAAATTTTGAGGTCCTTGATTTCTTACGAGCTAAAGGAGCTTCAAAGGATCCAACAAGAGTTATTGCCAAAGTATCACAGTCTGAATACAAGGTTTATGATTATTTGGTTGACACTGCTGCCTCTGTTCAAACAAGAGAGAGCATCAATGAGTTCTTGAGAAGTGTTAAACAGCATGACCTGGCAAAAGCTGAGGTTCTGAACATATTAAACATTGGGCCAGCTGCCGAAGTTGAATTATACCCAGTAAGTATCAAAATTTTGATTTTCCCATTTATTTTACACCCAAGCATAGTTAGAAGTTATTAGCTCTGCAATATTTTAGCTGCAACCACATTGTCTGCAACATGTTTTCTGTTATTTGCCTTTAGCTTTGAAGTACAAGTTGAAAGGGGCAGTGCTTTTATTAATTTTGTTCACAAATAATACATTCTCTAATTCTTCTATTATAGGGGAACAATTGTCCCTTAAATTAGGAAACAAGGAAACTGTGAGGAAATAAAAGAAACAAAGTAAAATATCACATATTTTGATCCCCT
>Glyma.11g217000.1 sequence-type=CDS polypeptide=Glyma.11g217000.1.p locus=Glyma.11g217000 ID=Glyma.11g217000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAAATCTTAGAGGGCAATGCTGGTGCACTCACAAATTTTGAGGTCCTTGATTTCTTACGAGCTAAAGGAGCTTCAAAGGATCCAACAAGAGTTATTGCCAAAGTATCACAGTCTGAATACAAGGTTTATGATTATTTGGTTGACACTGCTGCCTCTGTTCAAACAAGAGAGAGCATCAATGAGTTCTTGAGAAGTGTTAAACAGCATGACCTGGCAAAAGCTGAGGTTCTGAACATATTAAACATTGGGCCAGCTGCCGAAGTTGAATTATACCCAATCTTAGAGGAATCTGATGAGCGTTTTGGAGATGAAGGTGTAACTGAAATAGTAGAGCTGGTGAAGAAAACATTGCCACTGCCTCTCAATATGAAGAAGGAAGAAATCACCAAGGGTGACGAAGAAACCGCAACACTGAAAAATGAAAAAGGTAATAAGATTCGTCAAGACCAAAACGAAGATGGAGAAGAAATGGACACAAGTTAA >Glyma.11g217000.2 sequence-type=CDS polypeptide=Glyma.11g217000.2.p locus=Glyma.11g217000 ID=Glyma.11g217000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAAATCTTAGAGGGCAATGCTGGTGCACTCACAAATTTTGAGGTCCTTGATTTCTTACGAGCTAAAGGAGCTTCAAAGGATCCAACAAGAGTTATTGCCAAAGTATCACAGTCTGAATACAAGGTTTATGATTATTTGGTTGACACTGCTGCCTCTGTTCAAACAAGAGAGAGCATCAATGAGTTCTTGAGAAGTGTTAAACAGCATGACCTGGCAAAAGCTGAGGTTCTGAACATATTAAACATTGGGCCAGCTGCCGAAGTTGAATTATACCCAGTAAGTATCAAAATTTTGATTTTCCCATTTATTTTACACCCAAGCATAGTTAGAAGTTATTAG
>Glyma.11g217000.1.p sequence-type=predicted peptide transcript=Glyma.11g217000.1 locus=Glyma.11g217000 ID=Glyma.11g217000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKILEGNAGALTNFEVLDFLRAKGASKDPTRVIAKVSQSEYKVYDYLVDTAASVQTRESINEFLRSVKQHDLAKAEVLNILNIGPAAEVELYPILEESDERFGDEGVTEIVELVKKTLPLPLNMKKEEITKGDEETATLKNEKGNKIRQDQNEDGEEMDTS* >Glyma.11g217000.2.p sequence-type=predicted peptide transcript=Glyma.11g217000.2 locus=Glyma.11g217000 ID=Glyma.11g217000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKILEGNAGALTNFEVLDFLRAKGASKDPTRVIAKVSQSEYKVYDYLVDTAASVQTRESINEFLRSVKQHDLAKAEVLNILNIGPAAEVELYPVSIKILIFPFILHPSIVRSY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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