Glyma.11g208900

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Report for Sequence Feature Glyma.11g208900

Feature Type:	gene_model
Chromosome:	Gm11
Start:	30014836
stop:	30017716
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.11g208900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09970.1	AT	Calcineurin-like metallo-phosphoesterase superfamily protein	JGI	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	JGI	N/A	IEA
KOG0374	KOG	Serine/threonine specific protein phosphatase PP1, catalytic subunit	JGI	N/A	IEA
PTHR11668	Panther	SERINE/THREONINE PROTEIN PHOSPHATASE	JGI	N/A	IEA
PTHR11668:SF91	Panther		JGI	N/A	IEA
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI	N/A	IEA

Expression Patterns of Glyma.11g208900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.11g208900

Paralog	Evidence	Comments
Glyma.10g067300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g208900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g21640	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.11g208900

Limit To All Plant Sequences

>Glyma.11g208900.1 sequence-type=CDS polypeptide=Glyma.11g208900.1.p locus=Glyma.11g208900 ID=Glyma.11g208900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAGAGCCCCCAAAAACCAGAGCAGTCATCTGCGTGGGCGACATCCACGGCTTCATAACAAAGCTCCAAAGCCTCTGGAAGAACCTCGAAGGCAGCCTCGACCGATCCGAATTCGAAACCGCAACCCTAATCTTCCTCGGCGACTACTGCGACCGAGGGCCCGCCACCCGCCAAGTCATCGACTTCCTGATCTCCTTACCCTCGCGTTACCCGCGGCAGAAGCACGTGTTCCTCTGCGGCAACCACGACTTGGCCTTCGCGGCCTTCCTCCGCCTCCTCCCGGCGCCGGCGGATGGGTGTGGGTTCTCGGAGGGGTGGAGGGAATACGAGGCGAGCGAGGAGCGCGAAGGGTGGTTCAAGGGGGAAGGGTACGAGGACATGCACCTGCAAGGGAGGAGGTGGAGTGGGAAGATAAAGGTGAAGTTTAACACGGTTAAGGGGACGGAGTATCAGGGCTCCATTTATGACGCTGGACCAACCTTTGAGTCCTATGGAGTTCCCCATGGCTCCGCCGATTTGGTTAAGGCTGTTCCTGATGATCACAAGAAATTTCTTGCTGATTTGGTTTGGGTCCATGAAGAGGACGATGTCTTTGTGAACACTGATGATGGAGTTAAATGCTGCAAATTGATTGCTGTTCATGCTGGTTTGGAGAAAGGAAAAGATGTGAAAGAGCAGTTAAAACTTTTGAAAGCTCGGGATACTCGGGTGCCTAAGGTGGAGGCTCTAAGTGGGAGAAAGAGTGTTTGGGATATTCCAGAGGAACTAACTGCAAGTCCAGCCATTGTTGTTAGTGGTCACCACGCGAAACTCCATGTAGAAGGCTTAAGGCTGATCATTGATGAAGGTGGTGGATATAAAGATAGACCAGTGGCTGCAATTATTCTTCCTTCAATGAAGATTATTCGTGATACAGATGAATTAGCAAAATAG

Predicted protein sequences of Glyma.11g208900

Limit To All Plant Sequences

>Glyma.11g208900.1.p sequence-type=predicted peptide transcript=Glyma.11g208900.1 locus=Glyma.11g208900 ID=Glyma.11g208900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEPPKTRAVICVGDIHGFITKLQSLWKNLEGSLDRSEFETATLIFLGDYCDRGPATRQVIDFLISLPSRYPRQKHVFLCGNHDLAFAAFLRLLPAPADGCGFSEGWREYEASEEREGWFKGEGYEDMHLQGRRWSGKIKVKFNTVKGTEYQGSIYDAGPTFESYGVPHGSADLVKAVPDDHKKFLADLVWVHEEDDVFVNTDDGVKCCKLIAVHAGLEKGKDVKEQLKLLKARDTRVPKVEALSGRKSVWDIPEELTASPAIVVSGHHAKLHVEGLRLIIDEGGGYKDRPVAAIILPSMKIIRDTDELAK*

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