Glyma.11g201500

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Report for Sequence Feature Glyma.11g201500

Feature Type:	gene_model
Chromosome:	Gm11
Start:	28185674
stop:	28188219
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.11g201500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G58250.1	AT		JGI	N/A	IEA
PF10674	PFAM	Protein of unknown function (DUF2488)	JGI	N/A	IEA
CHLOROPHYLL-SYN	SoyCyc9	3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent)	Plant Metabolic Network		ISS
GN7V-67011	SoyCyc9-rxn	13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester 13-dehydrogenase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.11g201500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g201500 not represented in the dataset	Glyma.11g201500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.11g201500

Paralog	Evidence	Comments
Glyma.18g049400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g201500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma11g31660	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.11g201500

Limit To All Plant Sequences

>Glyma.11g201500.2 sequence-type=transcript locus=Glyma.11g201500 ID=Glyma.11g201500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTGGGAAAGTAACTAGGAAGGGAAGTAACCTAGGTAGATTTAGATAACTAGATAAGGTTGTCGTTGATATCTCCCAATTTGTCCCATAAGCCATTGTACATGCGCCATTTGCAGTCTTCACTTCTTGTCCTAAGCCTCAacacaaacacaaactcaaacacacacacTCTTTCTTCTATCTTCTCCCAATTTGAGTTGAGATTCTGAGAGTAACAATCAAAGTTTGGAAAAAAAAAAAGTTTTGAGGGAAGAAAAGACCAATATGCTGGGTGTGGCCACTCTTACTTTGGGTTCATCCACCACAATGGTGGCTCAGAACCATGCTCAACAACATGCCACCACTCTTGCCTCAGCCAATGGAAACAGAAGGCACAGTGTTTCCAACAGGACTCACTCCTTGCCTATGAGTTTGGTGTCTCCCACCAACCAAAGTTTCACCTTTCTCTCTTCCTTTAAAGAACCAACACATGCACGCCCCTTCACCACTGCTGTTGCATCTGTTGATTCTGACCAGCTTGATTCATCTGATCCTCCCACCAAGAATGAAGCCACCAAGTATTATTTTCTTGTTGCAAATGCAAAGTTTATGTTGGACGAGGAGGAGCATTTCCAAGAGCAATTGTTCGAGCGGCTTCGTCTCTTTGGAGAGCGTAATCAAGAACAGGATTTCTGGCTTGTCATTGAGCCTAAGTTCTTGGATAAGTTTTCTAACATTACCAAGAGATTAAAGAGACCTGCTGTTGCTCTTGTGTCAACCAATGGTCCCTGGATCACGTAAGAACGTCAATTCTTCATTTTTCAGTGATTGATTCTACAATTGCTTTTAACTGTGGAGTATACTTGAAAAGTATGATGCTACATTGATGCTTGGATTTGCTTTCATTAACTATAAAAGGAGGAAAATTTCTTTCATGTCATATCCAAATTATGTGTGTCTGTGGATGCTTTCATACATTGGTAGCCATTCTATGTAGAATAATCTCTAGACAAATCCCTAGCCACTTATGGTTGAGTACCTAATCTAAGCCTATGTGGCTAAAATAAATGTCTTTTTATGTGCTTGC

Coding sequences of Glyma.11g201500

Limit To All Plant Sequences

>Glyma.11g201500.1 sequence-type=CDS polypeptide=Glyma.11g201500.1.p locus=Glyma.11g201500 ID=Glyma.11g201500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGGGTGTGGCCACTCTTACTTTGGGTTCATCCACCACAATGGTGGCTCAGAACCATGCTCAACAACATGCCACCACTCTTGCCTCAGCCAATGGAAACAGAAGGCACAGTGTTTCCAACAGGACTCACTCCTTGCCTATGAGTTTGGTGTCTCCCACCAACCAAAGTTTCACCTTTCTCTCTTCCTTTAAAGAACCAACACATGCACGCCCCTTCACCACTGCTGTTGCATCTGTTGATTCTGACCAGCTTGATTCATCTGATCCTCCCACCAAGAATGAAGCCACCAAGTATTATTTTCTTGTTGCAAATGCAAAGTTTATGTTGGACGAGGAGGAGCATTTCCAAGAGCAATTGTTCGAGCGGCTTCGTCTCTTTGGAGAGCGTAATCAAGAACAGGATTTCTGGCTTGTCATTGAGCCTAAGTTCTTGGATAAGTTTTCTAACATTACCAAGAGATTAAAGAGACCTGCTGTTGCTCTTGTGTCAACCAATGGTCCCTGGATCACATTCATGAAGTTGAGACTGGACCGAGTTTTATCTGACTGTTTTGAAGCTGAGAGTCTAGAAGAAGCATTAGCTTTCAATCCTACTGATCTGAAGTTTGAGAAGCCTGAAAAATGGGTGGCACCCTATCCTAAATATGAATCTGGATGGTGGAAACCCTTCTTGCCCCCTGTTCAGACAGAGGTGAAGCCTTAA

>Glyma.11g201500.2 sequence-type=CDS polypeptide=Glyma.11g201500.2.p locus=Glyma.11g201500 ID=Glyma.11g201500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGGGTGTGGCCACTCTTACTTTGGGTTCATCCACCACAATGGTGGCTCAGAACCATGCTCAACAACATGCCACCACTCTTGCCTCAGCCAATGGAAACAGAAGGCACAGTGTTTCCAACAGGACTCACTCCTTGCCTATGAGTTTGGTGTCTCCCACCAACCAAAGTTTCACCTTTCTCTCTTCCTTTAAAGAACCAACACATGCACGCCCCTTCACCACTGCTGTTGCATCTGTTGATTCTGACCAGCTTGATTCATCTGATCCTCCCACCAAGAATGAAGCCACCAAGTATTATTTTCTTGTTGCAAATGCAAAGTTTATGTTGGACGAGGAGGAGCATTTCCAAGAGCAATTGTTCGAGCGGCTTCGTCTCTTTGGAGAGCGTAATCAAGAACAGGATTTCTGGCTTGTCATTGAGCCTAAGTTCTTGGATAAGTTTTCTAACATTACCAAGAGATTAAAGAGACCTGCTGTTGCTCTTGTGTCAACCAATGGTCCCTGGATCACGTAA

Predicted protein sequences of Glyma.11g201500

Limit To All Plant Sequences

>Glyma.11g201500.1.p sequence-type=predicted peptide transcript=Glyma.11g201500.1 locus=Glyma.11g201500 ID=Glyma.11g201500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLGVATLTLGSSTTMVAQNHAQQHATTLASANGNRRHSVSNRTHSLPMSLVSPTNQSFTFLSSFKEPTHARPFTTAVASVDSDQLDSSDPPTKNEATKYYFLVANAKFMLDEEEHFQEQLFERLRLFGERNQEQDFWLVIEPKFLDKFSNITKRLKRPAVALVSTNGPWITFMKLRLDRVLSDCFEAESLEEALAFNPTDLKFEKPEKWVAPYPKYESGWWKPFLPPVQTEVKP*

>Glyma.11g201500.2.p sequence-type=predicted peptide transcript=Glyma.11g201500.2 locus=Glyma.11g201500 ID=Glyma.11g201500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLGVATLTLGSSTTMVAQNHAQQHATTLASANGNRRHSVSNRTHSLPMSLVSPTNQSFTFLSSFKEPTHARPFTTAVASVDSDQLDSSDPPTKNEATKYYFLVANAKFMLDEEEHFQEQLFERLRLFGERNQEQDFWLVIEPKFLDKFSNITKRLKRPAVALVSTNGPWIT*

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