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Report for Sequence Feature Glyma.11g187800

Feature Type:gene_model
Chromosome:Gm11
Start:25959610
stop:25965901
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g187800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G44680.1AT histone deacetylase 9 JGI N/AIEA
GO:0006325GO-bp chromatin organization EnsemblGenomesN/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0016569GO-bp covalent chromatin modification EnsemblGenomesN/AIEA
GO:0016575GO-bp histone deacetylation EnsemblGenomesN/AIEA
GO:0070932GO-bp histone H3 deacetylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0004407GO-mf histone deacetylase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0032041GO-mf NAD-dependent histone deacetylase activity (H3-K14 specific) EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG1342 KOG Histone deacetylase complex, catalytic component RPD3 JGI N/AIEA
PTHR10625Panther HISTONE DEACETYLASE JGI N/AIEA
PTHR10625:SF28Panther JGI N/AIEA
PF00850PFAM Histone deacetylase domain JGI N/AIEA

Proteins Associated with Glyma.11g187800
LocusGene SymbolProtein Name
HDA12 histone deacetylase

Expression Patterns of Glyma.11g187800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g187800
ParalogEvidenceComments
Glyma.12g086700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g187800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g19290 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g187800
>Glyma.11g187800.1 sequence-type=CDS polypeptide=Glyma.11g187800.1.p locus=Glyma.11g187800 ID=Glyma.11g187800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTTCCAAGGACAAAATCGCTTACTTCTACGACGGTGATGTCGGTAGTGTATACTTTGGGGCGAAGCATCCAATGAAGCCCCACCGGCTTTGCATGACTCATCATCTTGTTCTCTCATACGATCTTCATAAGAAGATGGAGATTTACCGTCCACACAAGGCTTATCCTGTTGAGCTTGCCCAGTTTCATTCAGCTGATTATGTTGAGTTTTTGAACAGGATTACACCTGACACTCAGCACTTGTTCTTGAAGGAACTGACAAAATATAATCTTGGAGAAGACTGCCCTGTATTTGACAACTTATTTGAATTTTGTCAGATTTATGCTGGTGGAACTATAGATGCTGCACGTCGATTAAACAATCAATTGTGTGATATTGCTATAAACTGGGCCGGTGGACTACATCATGCTAAGAAATGCGAGGCATCTGGATTTTGTTACATCAATGACTTGGTTTTAGGAATCTTGGAGCTTCTTAAATATCATGCTCGTGTTTTGTATATTGATATAGATGTGCACCATGGTGATGGTGTAGAAGAAGCCTTCTACTTCACTGACAGGGTGATGACTGTCAGTTTTCACAAGTACGGAGATTTGTTCTTCCCAGGTACTGGCGATGCTAAGGAAATAGGAGAAAGAGAAGGAAAGTTTTATGCCATAAATGTCCCATTGAAGGATGGAATAGATGACAGTAGCTTCACTCGACTTTTCAAGACTATTATTTCCAAAGTACTTGAAACATATCAACCTGGTGCAATAGTTCTCCAGTGTGGAGCAGACTCGCTTGCTGGCGATCGCTTGGGTTGCTTCAATCTCTCTATTGATGGTCACGCTGAATGTGTTAGCTTCGTAAAGAGATTCAATTTGCCATTGCTGGTCACTGGAGGTGGGGGGTACACAAAAGAAAATGTTGCTCGATGTTGGACTGTTGAAACAGGAGTTCTTCTAGATACAGAGCTTCCAAATGAGATTCCGGAAAATGATTATATTAAATATTTTGCACCAGAATTTTCTTTGAAGATTCCAAATGGGCAGATAGAAAATTTGAATAGTAAATCATATCTTAGCACCATTAAAATGCAAGTCTTGGAAAATCTTCGTTGCATCCAACATGCTCCAAGTGTACAGATGCAGGAGGTCCCTCCGGACTTCTACATTCCAGAGTTCGATGAAGATGAGCAGAACCCTGATGAACGCCTTGATCAGCACACTCAAGACAAGCACATTCAGCGCGATGATGAATACTATGACGGTGACAATGACAATGATCAAATGGATGTTTCATGA
Predicted protein sequences of Glyma.11g187800
>Glyma.11g187800.1.p sequence-type=predicted peptide transcript=Glyma.11g187800.1 locus=Glyma.11g187800 ID=Glyma.11g187800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPSKDKIAYFYDGDVGSVYFGAKHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLNRITPDTQHLFLKELTKYNLGEDCPVFDNLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDLFFPGTGDAKEIGEREGKFYAINVPLKDGIDDSSFTRLFKTIISKVLETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVSFVKRFNLPLLVTGGGGYTKENVARCWTVETGVLLDTELPNEIPENDYIKYFAPEFSLKIPNGQIENLNSKSYLSTIKMQVLENLRCIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERLDQHTQDKHIQRDDEYYDGDNDNDQMDVS*






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