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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33790.1 | AT | Jojoba acyl CoA reductase-related male sterility protein | JGI | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0010345 | GO-bp | suberin biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0035336 | GO-bp | long-chain fatty-acyl-CoA metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0044237 | GO-bp | cellular metabolic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0043231 | GO-cc | intracellular membrane-bounded organelle | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0050662 | GO-mf | coenzyme binding | JGI | N/A | IEA |
| GO:0080019 | GO-mf | fatty-acyl-CoA reductase (alcohol-forming) activity | EnsemblGenomes | N/A | IEA |
| GO:0080019 | GO-mf | fatty-acyl-CoA reductase (alcohol-forming) activity | JGI | N/A | IEA |
| GO:0102965 | GO-mf | alcohol-forming fatty acyl-CoA reductase activity | EnsemblGenomes | N/A | IEA |
| KOG1221 | KOG | Acyl-CoA reductase | JGI | N/A | IEA |
| PTHR11011 | Panther | MALE STERILITY PROTEIN 2-RELATED | JGI | N/A | IEA |
| PTHR11011:SF1 | Panther | JGI | N/A | IEA | |
| PF03015 | PFAM | Male sterility protein | JGI | N/A | IEA |
| PF07993 | PFAM | Male sterility protein | JGI | N/A | IEA |
| PWY-282 | SoyCyc9 | cuticular wax biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5884 | SoyCyc9 | wax esters biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-6733 | SoyCyc9 | sporopollenin precursors biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-58070 | SoyCyc9-rxn | alcohol-forming fatty acyl-CoA reductase | Plant Metabolic Network | ISS |
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Glyma.11g185000 not represented in the dataset |
Glyma.11g185000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.12g087400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g19150 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g185000.1 sequence-type=CDS polypeptide=Glyma.11g185000.1.p locus=Glyma.11g185000 ID=Glyma.11g185000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGTTGGGAAGCATACTCCATTTTCTTCAGGATAAGAGCATTTTGATCACTGGAGCCACCGGTTTTCTTGCCAAAGTTTTGTTGGAGAAGATATTGAGGGTCCAACCAAATGTTAAGAAGCTTTACCTTCTTTTAAGAACTGAAGATGCCAAATCTGCTACTCATCGCTTGCACAATGAGATCATAGGGAAGGATTTGTTTAGGGTACTAAAGGAGAAATTGGGTGCAAATTTTAATTCCTTTGTCTCGAAAAAGTTGACTCTGGTACCTGGGGACATTTCTCGTGAGGACTTGGGATTGGAGGATTCCATTCTAAGGGAAGAGATTTATGATCAAACAGATGTCATTATTAACTTAGCTGCAACAACTAACTTTGATGAAAGGTATGATATATCGTTGGGCCTAAATACCTTTGGTGTTAAGTATGTCATCAACTTCGCCAAAAAATGTACCAAACTCAAGGTTCTTGTGCATGTATCAACAGCCTATGTATGTGGTGAGGGAGGCCGAGAAGGGCTCATATTAGAGAAACCATATCATTTGGGTGATTCACTTAATGGAGTGTCTGGATTAGACATTAATGCAGAAGAGAAAGTTGTGCGCGACAAATTAAGTGAGTTACAACAACTGGGGGCCACAGAAAAGGAAATTAAAGAGGTTATGAAGGACTTGGGCATTAGCAGGGCAAAGTTATATGGATGGCCAAATACATATGTATTCACCAAGGCAATGGGAGAGATGCTTGTGGAGCAACTAAAAGGAAACTTATCCGTTGTGATCATTCGTCCCAGCATTGTTACCAGCACATTAAAAGAACCTTTCCCTGGTTGGGCTGAAGGTGTAAGAACCATTGACAGTTTAGCTGTAGCTTATGGGAAAGGAAAATTAACATGCTTCCTTGGAGATCTAAAAGCAATTGTTGATGCGATTCCAGCAGACATGGTGGTGAATGCAATACTTGTGGCCATGGTGGCTCATGCAAATCGTCCTAGTGATGATGTTATATATCATATTGGTTCCTCTGTTAGAAGACCACTAAGATATGGCAAACTTCAAGAGTATGGATTTAGATATTTCACAGCAAAACCATGCATAAGTAAGGATGGAAGGCCAGTTAAGGTTGGAAAAGTTACAGTACTGAGCAATATGGATAGCTTCAGAAGATATATGTTCATTCGCTACCTGCTTGTGTTAAAGGGACTTGAGCTTGCCAATACTGCATTTTGCCAGTATTTCCAAGGAACATATCTTGATCTCAATAGGAAGATCCAGATTGTGATGCGGTTGGTGGACCTTTACAAACCTTACTTGTTCTTCAAAGCTGCATTTGATGATATGAACACAGAGAAGTTGAGAATGGCAGGAAGACAAGGTGGGGTGGAGACAGATTTGTTTTATTTTGACCCCGAACTGATTGATTGGGAAGATTACTTTCTGAACATCCATCTTCCTGGTATGGTGAAGTACATATTGAAGTGA
>Glyma.11g185000.1.p sequence-type=predicted peptide transcript=Glyma.11g185000.1 locus=Glyma.11g185000 ID=Glyma.11g185000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MELGSILHFLQDKSILITGATGFLAKVLLEKILRVQPNVKKLYLLLRTEDAKSATHRLHNEIIGKDLFRVLKEKLGANFNSFVSKKLTLVPGDISREDLGLEDSILREEIYDQTDVIINLAATTNFDERYDISLGLNTFGVKYVINFAKKCTKLKVLVHVSTAYVCGEGGREGLILEKPYHLGDSLNGVSGLDINAEEKVVRDKLSELQQLGATEKEIKEVMKDLGISRAKLYGWPNTYVFTKAMGEMLVEQLKGNLSVVIIRPSIVTSTLKEPFPGWAEGVRTIDSLAVAYGKGKLTCFLGDLKAIVDAIPADMVVNAILVAMVAHANRPSDDVIYHIGSSVRRPLRYGKLQEYGFRYFTAKPCISKDGRPVKVGKVTVLSNMDSFRRYMFIRYLLVLKGLELANTAFCQYFQGTYLDLNRKIQIVMRLVDLYKPYLFFKAAFDDMNTEKLRMAGRQGGVETDLFYFDPELIDWEDYFLNIHLPGMVKYILK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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