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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05580.1 | AT | fatty acid desaturase 8 | JGI | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0016717 | GO-mf | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | EnsemblGenomes | N/A | IEA |
| GO:0016717 | GO-mf | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | JGI | N/A | IEA |
| PTHR19353 | Panther | FATTY ACID DESATURASE 2 | JGI | N/A | IEA |
| PTHR19353:SF7 | Panther | JGI | N/A | IEA | |
| PF00487 | PFAM | Fatty acid desaturase | JGI | N/A | IEA |
| PF11960 | PFAM | Domain of unknown function (DUF3474) | JGI | N/A | IEA |
| PWY-5997 | SoyCyc9 | α-linolenate biosynthesis I (plants and red algae) | Plant Metabolic Network | ISS | |
| PWY-762 | SoyCyc9 | phospholipid desaturation | Plant Metabolic Network | ISS | |
| PWY-782 | SoyCyc9 | glycolipid desaturation | Plant Metabolic Network | ISS | |
| GN7V-62857 | SoyCyc9-rxn | 1-18:2-2-trans-16:1-phosphatidylglycerol desaturase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| FAD3d | omega-3-fatty acid desaturase 3 gene 4 | |
| FAD3-2b | omega-3 fatty acid desaturase D | |
| FAD3 | omega-3-fatty acid desaturase 3  |
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Glyma.11g174100 not represented in the dataset |
Glyma.11g174100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.18g062000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g27190 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g174100.1 sequence-type=CDS polypeptide=Glyma.11g174100.1.p locus=Glyma.11g174100 ID=Glyma.11g174100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTTCAAGCACAGCCTCTACAACATGTTGGTAATGGTGCAGGGAAAGAAGATCTAGCTTATAATTTTGATCCAAGTGCTCCACCACCCTTCAAGATTGCAGATATCAGAGCAGCAATTCCAAAGCATTGCTGGGAGAAGAACACATTGAGATCTCTGAGTTACGTTCTGAGGGATGTGTTGATAGTTTCTGCATTGGTAGCTGCAGCAATTGGCTTCAATAGCTGGCTCTTCTGGCCACCCTATTGGTCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGTGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCACATCTTGCACTCTTCAATCCTTGTACCATACCATGGATGGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCGCTTTCAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAGATTCACTCTTCCTTTCCCCATCTTTGCATACCCCTTTTATTTGTGGAGCAGAAGCCCAGGAAAAGAAGGTTCTCATTTCAACCCTTACAGCAACTTGTTCTCCCCTGGTGAGAGAAGAGATGTGATAACTTCAACTCTTTGTTGGGGCATCATGCTTTCTCTGCTTCTCTATCTTTCCCTCACATTGGATCCACTTTTTATGTTCAAGCTTTATGGGGTTCCTTATTTGATCTTCGTCGTGTGGCTGGATTTCGTCACATACTTGCATCATCATGGTTACAAGCAGAAACTACCTTGGTACCGTGGCCAGGAATGGACTTATCTAAGGGGTGGTCTTACAACCGTAGATCGTGACTATGGTTGGATCAACAACATTCACCATGACATTGGCACCCATGTCATCCATCACCTTTTCCCTCAGATTCCACATTATCATTTGGTTGAAGCGACTAAAGCAGCTAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAATCAGGGCCATTGCCACTTCATCTTATCAAGTACTTGCTACACAGCATAAGTCAGGATCACTTCGTTAGTGACTATGGTGACATTGTGTACTACCAAACTGATTCTCAGTTCCACAAAGATTCTTGGACCAAGTCCAACTAA
>Glyma.11g174100.1.p sequence-type=predicted peptide transcript=Glyma.11g174100.1 locus=Glyma.11g174100 ID=Glyma.11g174100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVQAQPLQHVGNGAGKEDLAYNFDPSAPPPFKIADIRAAIPKHCWEKNTLRSLSYVLRDVLIVSALVAAAIGFNSWLFWPPYWSAQGTMFWALFVLGHDCGHGSFSNSPMLNSIVGHILHSSILVPYHGWRISHRTHHQNHGHVEKDESWVPLSEKVYKNLDNMTRMMRFTLPFPIFAYPFYLWSRSPGKEGSHFNPYSNLFSPGERRDVITSTLCWGIMLSLLLYLSLTLDPLFMFKLYGVPYLIFVVWLDFVTYLHHHGYKQKLPWYRGQEWTYLRGGLTTVDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATKAAKAVLGKYYREPQKSGPLPLHLIKYLLHSISQDHFVSDYGDIVYYQTDSQFHKDSWTKSN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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