SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23880.1 | AT | cleavage and polyadenylation specificity factor 100 | JGI | N/A | IEA |
| GO:0006378 | GO-bp | mRNA polyadenylation | EnsemblGenomes | N/A | IEA |
| GO:0006379 | GO-bp | mRNA cleavage | EnsemblGenomes | N/A | IEA |
| GO:0006397 | GO-bp | mRNA processing | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005847 | GO-cc | mRNA cleavage and polyadenylation specificity factor complex | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| PTHR11203 | Panther | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR | JGI | N/A | IEA |
| PTHR11203:SF5 | Panther | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 | JGI | N/A | IEA |
| PF00753 | PFAM | Metallo-beta-lactamase superfamily | JGI | N/A | IEA |
| PF10996 | PFAM | Beta-Casp domain | JGI | N/A | IEA |
|
Glyma.11g171100 not represented in the dataset |
Glyma.11g171100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma11g27538 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.11g171100.1 sequence-type=CDS polypeptide=Glyma.11g171100.1.p locus=Glyma.11g171100 ID=Glyma.11g171100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGAACATCAGTGCGAGTAACGCCACTGTGTGGAGTGTACAATGAGAACCCTCTCTCGTATTTGGTCTCCATTGATGGCTTCAACTTCCTCGTCGACTGTGACTGGAACGACCACTTCGACCCTTCCCACCTTCAACCCCTCGCCAGGGTAGCATCAACCATAGATGCTGTTTTGCTTTCACATGCGGATACACTTCACCTTGGTGCCCTTCCATATGCCATGAAGCGGCTTGGACTCTCTGCCCCGGTTTATTCAACGGAGCCTATCTACAGATTGGGCCTTCTCACTATGTATGACCAGATGTTGAATATCTCGTCCTCTTCTGTGTGTCAAGTGTCGGGGTTCGATCTGTTCACGCTTGATGATATTGATTCTGCTTTCCAGAGTGTAACGAGGATAACATATTCTCAGAATCATCATTTCTCTGGCAAGGGAGAAGGGATAGTGATTGCACCTCATGTTGCTGGACATCTTCTGGGAGGTACTATTTGGAAAATTACAAAGGATGGTGAGGACGTCATATATGCTGTTGATTTTAATCATAGGAAAGAAAGGCATTTGAATGGAACTGTTCTAGGTTCTTTTGTGCGTCCAGCTGTTCTAATAACTGATGCTTACAATGCTTTGAACAATCAGCCTTACAGACATATCTTAAAGAAGACTCTAAGGGCAGGTGGCAATGTATTACTACCTGTTGACACAGTTGGACGACTGTTGGAACTTATTCTGATGTTGGAATTGTATTGGGCAGATGAAAACTTGAACTACCCTATATATTTTCTTACATATGTTGCATCCAGCACAATTGATTATGTGAAGAGTTTCCTTGAGTGGATGAGTGATACCATAGCAAAGTCTTTTGAAAAAACTCACTGCTATGCTTGTACCTGTTGGTATGTCACCCTTCTGATTAACAAGACTGAGCTTGACAATGCTCCAGATGGCCCAAAGGTTGTTCTAGCATCCATGGCAAGTTTGGAAGCAGGCTTTTCTCATGATATATTTGTTGAGTGGGCCAATGATGTAAAAAATCTTGTCCTTTTTACCGAAAGAGGCCAGTTTGCCACACTAGCTCGTATGCTTCAAGCTGATCCACCTCCAAAAGCTGTCAAAGTCATTGTGTCCAAGTGTGTGCCTTTGGTTGGGGAAGAGCTAATCTCCTATGAAGAAGAACAAAATCGAATTAAAAAAGAAGCTTTAAAAGCCAGTCTTGTGAAAGAGGAAGAATTGAAAACATCTCATGGGGCTGATAATGATACTAGTGATCCAATGGTCATTGATTCTGGCAATAACCATGTACCACCTGAAGTGACTGGTCCACGAGGCGGAGGTTACCGGGACATATTTATTGATGGATTTGTTCCCCCTTCAACGAGTGTTGCTCCAATATTTCCCTGTTATGAGAATACATCAGAGTGGGATGATTTTGGTGAGGTCATAAATCCAGATGATTATGTAATTAGGGATGAAGACATGGACCAGACAGCAAAGCATACATGCTTCAGGCAGTGCTGTTTCAGATGCTCTGTAGCTTCAGCTGATCCATGCACCAAAACCTTTCGAAAAATCATTATGTATTCGTCATCATGCATGATACAGAAACAAAAAGGCAAACTGAAGATTAAGTCCCTGGTCAAAGTATTGCTTTGCTCAAGATACCATGGTATTTAA
>Glyma.11g171100.1.p sequence-type=predicted peptide transcript=Glyma.11g171100.1 locus=Glyma.11g171100 ID=Glyma.11g171100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGTSVRVTPLCGVYNENPLSYLVSIDGFNFLVDCDWNDHFDPSHLQPLARVASTIDAVLLSHADTLHLGALPYAMKRLGLSAPVYSTEPIYRLGLLTMYDQMLNISSSSVCQVSGFDLFTLDDIDSAFQSVTRITYSQNHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQPYRHILKKTLRAGGNVLLPVDTVGRLLELILMLELYWADENLNYPIYFLTYVASSTIDYVKSFLEWMSDTIAKSFEKTHCYACTCWYVTLLINKTELDNAPDGPKVVLASMASLEAGFSHDIFVEWANDVKNLVLFTERGQFATLARMLQADPPPKAVKVIVSKCVPLVGEELISYEEEQNRIKKEALKASLVKEEELKTSHGADNDTSDPMVIDSGNNHVPPEVTGPRGGGYRDIFIDGFVPPSTSVAPIFPCYENTSEWDDFGEVINPDDYVIRDEDMDQTAKHTCFRQCCFRCSVASADPCTKTFRKIIMYSSSCMIQKQKGKLKIKSLVKVLLCSRYHGI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
