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Report for Sequence Feature Glyma.11g170300

Feature Type:gene_model
Chromosome:Gm11
Start:18242402
stop:18247271
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.11g170300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G47340.1AT glutamine-dependent asparagine synthase 1 JGI N/AIEA
GO:0006529GO-bp asparagine biosynthetic process EnsemblGenomesN/AIEA
GO:0006529GO-bp asparagine biosynthetic process JGI N/AIEA
GO:0006541GO-bp glutamine metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0009646GO-bp response to absence of light EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004066GO-mf asparagine synthase (glutamine-hydrolyzing) activity EnsemblGenomesN/AIEA
GO:0004066GO-mf asparagine synthase (glutamine-hydrolyzing) activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0016874GO-mf ligase activity EnsemblGenomesN/AIEA
GO:0042803GO-mf protein homodimerization activity EnsemblGenomesN/AIEA
KOG0571 KOG Asparagine synthase (glutamine-hydrolyzing) JGI N/AIEA
PTHR11772Panther ASPARAGINE SYNTHETASE JGI N/AIEA
PF00733PFAM Asparagine synthase JGI N/AIEA
ASPARAGINE-BIOSYNTHESISSoyCyc9 L-asparagine biosynthesis I Plant Metabolic Network ISS
ASPARAGINESYN-PWYSoyCyc9 L-asparagine biosynthesis II Plant Metabolic Network ISS
GLUTAMINDEG-PWYSoyCyc9 L-glutamine degradation I Plant Metabolic Network ISS
PWY0-1325SoyCyc9 superpathway of L-asparagine biosynthesis Plant Metabolic Network ISS
GN7V-53237SoyCyc9-rxn aspartate-ammonia ligase Plant Metabolic Network ISS

Expression Patterns of Glyma.11g170300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.11g170300
ParalogEvidenceComments
Glyma.18g061100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.11g170300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g27720 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.11g170300
>Glyma.11g170300.1 sequence-type=CDS polypeptide=Glyma.11g170300.1.p locus=Glyma.11g170300 ID=Glyma.11g170300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGTGGCATACTTGCTGTGCTTGGTTGCTCTGATTCATCTCAAGCCAAAAGGGTTCGCGTCCTTGAGCTTTCTCGCAGATTGAAGCACCGTGGTCCTGACTGGAGTGGGCTCCACCAATATGGTGATAACTATTTGGCTCATCAAAGGTTAGCCATAGTTGATCCAGCGTCTGGTGATCAACCCCTCTTCAATGAAGACAAAACTGTAGTGGTTACGGTGAATGGAGAGATCTACAATCATGAAGAACTCAGGAAACAGTTGCCTAATCACACCTTCCGTACAGGAAGTGACTGTGATGTTATTGCTCACCTGTATGAGGAGCACGGAGAAAACTTTGTGGACATGCTTGATGGTATATTTTCGTTTGTTCTGCTAGATACTCGTGACAACAGTTTTATAGTGGCACGAGATGCAATTGGGGTCACTTCCTTGTACATTGGTTGGGGTCTAGATGGCTCTGTCTGGATTTCATCAGAATTGAAGGGGTTGAATGATGATTGCGAACATTTTGAGTCTTTTCCACCTGGTCACTTGTACTCTAGCAAAGAGAGAGCGTTTCGCAGATGGTACAATCCTCCATGGTTCTCTGAGGCTATTCCCTCAGCACCTTATGATCCTCTTGCTTTGAGGCATGCCTTTGAGAAGGCTGTGGTAAAAAGGTTGATGACTGATGTTCCCTTTGGTGTTTTGCTCTCTGGAGGTTTGGACTCTTCATTGGTTGCAGCCGTCACGGCTCGCTACCTGGCAGGCACAAATGCTGCCAAGCAATGGGGAACCAAATTACACTCTTTCTGTGTAGGCCTTGAGGGTGCACCTGACCTAAAGGCAGCAAAGGAAGTAGCAGACTACATAGGTACTGTACATCATGAATTTCACTACACTGTTCAGGATGGCATAGATGCCATTGAGGATGTGATCTATCACATTGAAACATATGATGTGACAACAATTAGAGCAAGCATTCCCATGTTTCTTATGTCTCGTAAGATCAAGTCATTGGGAGTCAAATGGGTTATATCTGGAGAAGGATCTGATGAGATCTTTGGAGGGTATCTATATTTCCACAAGGCACCAAACAAAGAAGAATTTCATCAAGAAACATGCCGCAAGATTAAAGCACTCCACAAATATGATTGCTTGCGAGCCAATAAATCGACCTTTGCCTGGGGTCTAGAAGCCAGAGTGCCATTTTTGGACAAAGATTTTATCAGAGTTGCAATGAACATTGATCCTGAGTATAAAATGATTAAAAAGGAAGAAGGGCGAATTGAGAAATGGGTACTGAGGAGGGCCTTTGATGATGAAGAACATCCTTATCTGCCAAAGCACATTTTATACAGGCAGAAAGAACAATTCAGTGATGGAGTTGGCTATGGTTGGATTGATGGCCTTAAAGCTCATGCTGAGAAACATGTGACTGATAGAATGATGCTCAATGCTGCTAACATTTTCCCCTTCAACACACCAACCACCAAAGAAGCATACTACTATAGAATGATATTTGAGAGGTTCTTCCCTCAGAACTCAGCCAGGCTGAGTGTTCCTGGAGGACCAAGTGTTGCATGTAGCACAGCCAAAGCTGTTGAGTGGGATGCTGCTTGGTCTAACAACCTTGATCCATCTGGTAGAGCAGCACTTGGAGTGCATGCATCAGCTTATGGAAATCAGGTCAAAGCTGTAGAACCAGAGAAGATCATACCAAAGATGGAAGTTTCTCCACTAGGAGTTGCCATATAG
Predicted protein sequences of Glyma.11g170300
>Glyma.11g170300.1.p sequence-type=predicted peptide transcript=Glyma.11g170300.1 locus=Glyma.11g170300 ID=Glyma.11g170300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MCGILAVLGCSDSSQAKRVRVLELSRRLKHRGPDWSGLHQYGDNYLAHQRLAIVDPASGDQPLFNEDKTVVVTVNGEIYNHEELRKQLPNHTFRTGSDCDVIAHLYEEHGENFVDMLDGIFSFVLLDTRDNSFIVARDAIGVTSLYIGWGLDGSVWISSELKGLNDDCEHFESFPPGHLYSSKERAFRRWYNPPWFSEAIPSAPYDPLALRHAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVTARYLAGTNAAKQWGTKLHSFCVGLEGAPDLKAAKEVADYIGTVHHEFHYTVQDGIDAIEDVIYHIETYDVTTIRASIPMFLMSRKIKSLGVKWVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHKYDCLRANKSTFAWGLEARVPFLDKDFIRVAMNIDPEYKMIKKEEGRIEKWVLRRAFDDEEHPYLPKHILYRQKEQFSDGVGYGWIDGLKAHAEKHVTDRMMLNAANIFPFNTPTTKEAYYYRMIFERFFPQNSARLSVPGGPSVACSTAKAVEWDAAWSNNLDPSGRAALGVHASAYGNQVKAVEPEKIIPKMEVSPLGVAI*






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